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Gene: Pdgfrb (platelet derived growth factor receptor beta) Ictidomys tridecemlineatus

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Symbol:

Pdgfrb

Name:

platelet derived growth factor receptor beta

RGD ID:

12487612

Description:

ENCODES a protein that exhibits kinase activity (ortholog); phosphatidylinositol 3-kinase binding (ortholog); platelet-derived growth factor receptor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); aorta morphogenesis (ortholog); blood vessel development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); autism spectrum disorder (ortholog); basal ganglia calcification (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

platelet derived growth factor receptor beta, transcript variant X1; platelet derived growth factor receptor beta, transcript variant X2; platelet derived growth factor receptor beta, transcript variant X3; platelet-derived growth factor receptor beta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	143,188,255 - 143,225,815 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	4,762,184 - 4,799,829 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	4,762,251 - 4,799,789 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atherosclerosis (ISO)

autism spectrum disorder (ISO)

basal ganglia calcification (ISO)

basal ganglia disease (ISO)

Brain Injuries (ISO)

breast cancer (ISO)

breast carcinoma (ISO)

Breast Neoplasms (ISO)

calcinosis (ISO)

Cardiomegaly (ISO)

cerebral palsy (ISO)

choriocarcinoma (ISO)

Chronic Allograft Nephropathy (ISO)

Colonic Neoplasms (ISO)

Dandy-Walker syndrome (ISO)

Diabetic Nephropathies (ISO)

Endometrioid Carcinomas (ISO)

Experimental Autoimmune Encephalomyelitis (ISO)

Experimental Colitis (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Liver Cirrhosis (ISO)

extrahepatic cholestasis (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

glioblastoma (ISO)

Hereditary Neoplastic Syndromes (ISO)

Hydatidiform Mole (ISO)

hydrocephalus (ISO)

Hyperoxia (ISO)

hypertension (ISO)

Idiopathic Basal Ganglia Calcification 1 (ISO)

Idiopathic Basal Ganglia Calcification 4 (ISO)

infantile myofibromatosis (ISO)

Infantile Myofibromatosis 1 (ISO)

Intimal Hyperplasia (ISO)

Kidney Reperfusion Injury (ISO)

Kosaki Overgrowth Syndrome (ISO)

Kuhnt-Junius degeneration (ISO)

Leydig cell tumor (ISO)

Lung Neoplasms (ISO)

metabolic dysfunction-associated steatohepatitis (ISO)

microcephaly (ISO)

middle cerebral artery infarction (ISO)

myeloproliferative disorder with eosinophilia (ISO)

myeloproliferative neoplasm (ISO)

Neointima (ISO)

Neoplasm Metastasis (ISO)

Neurodevelopmental Disorders (ISO)

oligohydramnios (ISO)

Ovarian Neoplasms (ISO)

Parkinsonism (ISO)

Penttinen-Aula Syndrome (ISO)

prostate cancer (ISO)

renal cell carcinoma (ISO)

schizophrenia (ISO)

sciatic neuropathy (ISO)

severe nonproliferative diabetic retinopathy (ISO)

Subarachnoid Hemorrhage (ISO)

Transplant Rejection (ISO)

Wounds and Injuries (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adrenal gland development (ISO)

angiogenesis (IEA)

animal organ development (IEA)

aorta morphogenesis (ISO)

blood vessel development (ISO)

brain-derived neurotrophic factor receptor signaling pathway (IEA)

cardiac myofibril assembly (ISO)

cell chemotaxis (IEA)

cell migration involved in coronary angiogenesis (ISO)

cell migration involved in vasculogenesis (ISO)

cell surface receptor protein tyrosine kinase signaling pathway (IEA)

cellular response to hydrogen peroxide (ISO)

chemotaxis (IEA)

collagen-activated tyrosine kinase receptor signaling pathway (IEA)

embryonic organ development (ISO)

ephrin receptor signaling pathway (IEA)

epidermal growth factor receptor signaling pathway (IEA)

fibroblast growth factor receptor signaling pathway (IEA)

glycosaminoglycan biosynthetic process (ISO)

hemopoiesis (ISO)

hepatocyte growth factor receptor signaling pathway (IEA)

in utero embryonic development (ISO)

inner ear development (ISO)

insulin receptor signaling pathway (IEA)

insulin-like growth factor receptor signaling pathway (IEA)

intracellular signal transduction (ISO)

kidney development (ISO)

Kit signaling pathway (IEA)

lung growth (ISO)

macrophage colony-stimulating factor signaling pathway (IEA)

male gonad development (ISO)

metanephric comma-shaped body morphogenesis (ISO)

metanephric glomerular capillary formation (ISO)

metanephric glomerular mesangial cell proliferation involved in metanephros development (ISO)

metanephric glomerular mesangium development (ISO)

metanephric glomerulus morphogenesis (ISO)

metanephric mesenchymal cell migration (ISO)

metanephric mesenchyme development (ISO)

metanephric S-shaped body morphogenesis (ISO)

negative regulation of apoptotic process (ISO)

peptidyl-tyrosine phosphorylation (ISO)

platelet-derived growth factor receptor signaling pathway (IEA,ISO)

platelet-derived growth factor receptor-alpha signaling pathway (IEA)

platelet-derived growth factor receptor-beta signaling pathway (IEA)

positive regulation of apoptotic process (ISO)

positive regulation of calcium ion import (ISO)

positive regulation of calcium-mediated signaling (IEA)

positive regulation of cell migration (IEA)

positive regulation of cell population proliferation (IEA,ISO)

positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway (IEA)

positive regulation of chemotaxis (ISO)

positive regulation of collagen biosynthetic process (ISO)

positive regulation of DNA biosynthetic process (ISO)

positive regulation of ERK1 and ERK2 cascade (IEA)

positive regulation of fibroblast proliferation (ISO)

positive regulation of hepatic stellate cell activation (ISO)

positive regulation of MAP kinase activity (ISO)

positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway (ISO)

positive regulation of mitotic nuclear division (ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA)

positive regulation of reactive oxygen species metabolic process (ISO)

positive regulation of Rho protein signal transduction (ISO)

positive regulation of smooth muscle cell migration (IEA)

positive regulation of smooth muscle cell proliferation (IEA)

protein autophosphorylation (ISO)

regulation of actin cytoskeleton organization (ISO)

regulation of peptidyl-tyrosine phosphorylation (ISO)

response to ceramide (ISO)

response to estradiol (ISO)

response to estrogen (ISO)

response to fluid shear stress (ISO)

response to hydrogen peroxide (ISO)

response to hyperoxia (ISO)

response to lipid (ISO)

response to retinoic acid (ISO)

response to toxic substance (ISO)

retina vasculature development in camera-type eye (ISO)

ruffle assembly (ISO)

signal transduction (IEA,ISO)

skeletal system morphogenesis (ISO)

smooth muscle cell chemotaxis (ISO)

smooth muscle tissue development (ISO)

tissue homeostasis (ISO)

vascular endothelial growth factor receptor-1 signaling pathway (IEA)

vascular endothelial growth factor signaling pathway (IEA)

Cellular Component

apical plasma membrane (ISO)

cell surface (ISO)

cytoplasm (ISO)

cytoplasmic vesicle (IEA)

Golgi apparatus (IEA)

intracellular membrane-bounded organelle (IEA)

lysosomal lumen (IEA)

lysosome (IEA)

membrane (IEA)

nucleus (ISO)

plasma membrane (IEA)

receptor complex (IEA)

ruffle (ISO)

Molecular Function

ATP binding (IEA)

boss receptor activity (IEA)

brain-derived neurotrophic factor receptor activity (IEA)

enzyme binding (IEA)

epidermal growth factor receptor activity (IEA)

fibroblast growth factor receptor activity (IEA)

GPI-linked ephrin receptor activity (IEA)

GTPase activator activity (IEA)

hepatocyte growth factor receptor activity (IEA)

insulin receptor activity (IEA)

insulin-like growth factor receptor activity (IEA)

kinase activity (ISO)

macrophage colony-stimulating factor receptor activity (IEA)

metal ion binding (IEA)

phosphatidylinositol 3-kinase binding (ISO)

phospholipase C activator activity (IEA)

placental growth factor receptor activity (IEA)

platelet-derived growth factor alpha-receptor activity (IEA)

platelet-derived growth factor beta-receptor activity (IEA)

platelet-derived growth factor binding (IEA)

platelet-derived growth factor receptor activity (ISO)

platelet-derived growth factor receptor binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein kinase binding (IEA)

protein tyrosine kinase activity (IEA)

protein tyrosine kinase collagen receptor activity (IEA)

signaling receptor binding (IEA)

stem cell factor receptor activity (IEA)

transmembrane-ephrin receptor activity (IEA)

vascular endothelial growth factor binding (IEA)

vascular endothelial growth factor receptor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

platelet-derived growth factor signaling pathway (ISO)

sphingosine 1-phosphate signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pdgfrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	143,188,255 - 143,225,815 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	4,762,184 - 4,799,829 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	4,762,251 - 4,799,789 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDGFRB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	150,113,839 - 150,155,845 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	150,113,839 - 150,155,872 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	149,493,402 - 149,535,408 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	149,473,595 - 149,515,615 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	149,473,595 - 149,515,503	NCBI
Celera	5	145,574,776 - 145,616,798 (-)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	144,641,381 - 144,683,476 (-)	NCBI		HuRef
CHM1_1	5	148,925,983 - 148,968,003 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	150,650,431 - 150,692,448 (-)	NCBI		T2T-CHM13v2.0

Pdgfrb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	61,178,194 - 61,218,139 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	61,178,222 - 61,218,133 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	61,045,127 - 61,085,067 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	61,045,150 - 61,085,061 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	61,204,804 - 61,244,721 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	61,170,810 - 61,210,428 (+)	NCBI		MGSCv36	mm8
Celera	18	62,332,161 - 62,372,066 (+)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	34.41	NCBI

Pdgfrb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	56,770,348 - 56,809,228 (+)	NCBI		GRCr8
mRatBN7.2	18	54,499,962 - 54,538,840 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	54,499,964 - 54,538,843 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	56,587,978 - 56,626,738 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	57,302,576 - 57,341,334 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,123,817 - 55,162,705 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	56,364,586 - 56,406,381 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	56,364,620 - 56,406,381 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	55,596,682 - 55,637,692 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	57,014,475 - 57,053,581 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	57,086,706 - 57,125,813 (+)	NCBI
Celera	18	52,652,411 - 52,691,218 (+)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

Pdgfrb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	4,365,743 - 4,403,587 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	4,365,848 - 4,403,317 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDGFRB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	145,342,640 - 145,388,629 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	143,482,189 - 143,524,580 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	145,538,330 - 145,580,312 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	151,543,581 - 151,585,630 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	151,543,891 - 151,585,530 (-)	Ensembl	panpan1.1		panPan2

PDGFRB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	58,925,922 - 58,963,639 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	58,926,351 - 58,962,283 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	58,692,327 - 58,728,259 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	59,406,388 - 59,444,135 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	59,406,430 - 59,444,130 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	59,195,608 - 59,231,543 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	59,310,188 - 59,346,130 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	59,841,270 - 59,877,207 (+)	NCBI		UU_Cfam_GSD_1.0

PDGFRB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	151,155,756 - 151,192,647 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	151,155,753 - 151,192,818 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	158,113,430 - 158,121,798 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDGFRB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	52,724,061 - 52,766,264 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	52,724,005 - 52,766,234 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	24,950,813 - 24,993,042 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdgfrb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	9,432,541 - 9,469,881 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	9,432,765 - 9,469,690 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024810 ⟹ ENSSTOP00000023255

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936504	4,762,184 - 4,799,829 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000039357 ⟹ ENSSTOP00000025360

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936504	4,777,842 - 4,797,954 (+)	Ensembl

RefSeq Acc Id:

XM_005324167 ⟹ XP_005324224

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	143,188,255 - 143,225,815 (+)	NCBI
SpeTri2.0	NW_004936504	4,762,251 - 4,797,954 (+)	NCBI

Sequence:

show sequence

AGCCCACAGTGGTGAGAGCTCCGGGGGCTGTCCGCGGTGGCAGTCCCTGCCCACCTAGCTGGGA
CCCTAGATCGTTCTGTAAGCAACTTGGAGCCAGAGAGGAGGAGACCAACAGGGAGGAGAGAGCC
AGGCCCCTCAGACCAGCCACCCGGCAGCAGCCTGTGCCCAGCAGACACCGCCGGCCAGACTCAG
GGCGGCCCCTCCTGGCAACTCTGCTCCTCCCTAAGGATGCTTTGGGAGTGAGGCGAGGCCGCCC
GCTCCTCACCCGTGCAGCACCCCCTCCCGCTCTCCTGCGTCTCAGAGAGCTTGCAAGGCTCCTG
CCTGCCCTTCAACCCAGCTGTTGCCCATCTCAGGTCCAGCAAAGTCTTTCTGATACCTGGGAGA
GGGCAGTAAGGCGGACTTCCTGGAGGGGGTGACAGCCCACAGCCTGGGACCCTGCCCACAACAG
AAGCCATGAGCGGAGAGGACATCATGCAGCTTCCAGGTGTGACGCCAGCTCTGGTCCTCAGAGG
CCAGTTGCTGTTGCTGCCCATGCTATTGCTGCTAGGTCCACAGACCTCCCAGGGCCTGACCATC
ATGCCCCCGGGGCCAGAGCTTGTACTTAATCTCTCAAGTACCTTTGTTCTGACCTGCCTGGGTT
CAGCTCCAGTGGTGTGGGAACGGCTATCTCAGGTGCCTCAGCAGAAAGTGTCCAGGACCCAGGA
GGGCACCTTCTCCAGCATGCTAACCCTGGCCAATGTCACTGGAGGTGACACAGGAGAGTACTTT
TGTACCTACAACAGCTCCCTTGGGCGGGAGCCCAGTGAGCGGAAGCGGCTCTACATCTTTGTGC
CTGATCCCTCCATGGGCTTCCTCCCTATGGAGCCCGAGGACCTATTCATCTTTCTCACGGAAAT
AACTGAGACCACAATTCCATGCCGAGTGACAGACCCCCAGCTAGTGGTGACACTGCATGAGAAG
AAAGAGGACATCCCGCTGCCTATCCCCTATGACCACCAACGAGGCTTCTCTGGTACCTTTGAGG
ACAAGACCTATATCTGCCGAACCACCATTGGGGAGAGGGAAGTGGATTCCGATGCCTATTACGT
CTACAGCCTCCAGGTTTCCACCATCAATGTCTCAGTGAATGCAGTGCAGACTGTGGTTCGCCAG
GGTGAGAACATTACCATCATGTGCATTGTGACGGGGAATGAGGTGGTCAATTTTGAGTGGACCT
ACCCCCGCATGGAGAGTGGGCGCCTCGTAGAGCCAGTGACAGATTTCCTCTTTGATGTGCCCTC
CCACATTCGCTCCATCCTCCACATCCCCAGTGCTGAGCTGGATGACTCAGGGACCTACATCTGC
AATGTGTCAGAGAGTGTGAATGACCATCGAGATGAAAAGGCCATCAATGTCACTGTGGTCGAGA
GTGGCTACGTGCGGCTTCTGGGAGACTTGGGCGCTATACAAATTGCTGAGCTGCACAGGAGTCG
GACACTACAAGTGGTGTTCGAAGCCTACCCGCCACCTACTGTGCTGTGGTTCAAGGACAACCGC
ACCCTGGGTGATTCCAGCGCCGGCGAGATCGCCCTGTCCACGCGCAATGTGTCTGAGACCCGAT
ATGTATCAGAACTGACACTGGTGCGGGTGAAGGTGGCAGAGGCTGGCTACTATACCATGCGGGC
CTTCCATGAGGATGCTGAGGCCCAACTTTCCTTCAAGCTGCAGGTCAATGTCCCTGTCCGTGTG
CTGGAGCTGAGCGAGAGTCACCCTGCCAACGGGGAGCAGACAGTCCGCTGTCGTGGCCGAGGCA
TGCCCCAGCCAAATATCACCTGGTCTACCTGCAGAGACCTCAAAAGGTGTCCACGCGAGCTGCC
GCCCACACCGCTGGGGAACAGTTCCGAGGAGGAAAGCCAGTTGGAGACTAATGTGACATACTGG
GCGGAGGAGCAGGAATATGAGGTGGTGAGCACGCTGCGCCTGCGCCACGTGGATCAGCCACTGT
CGGTGCGCTGCATGCTGCACAACCCACTGGGCCAGGATGTGCAGGAGGTTACCGTGGTGCCGCA
TTCCCTCCCCTTCAAGGTGGTGGTGATCTCAGCCATCCTGGCCTTGGTGGTTCTCACAATCATC
TCCCTCATCATCCTCATCATGCTCTGGCAGAAGAAGCCACGCTATGAGATTCGATGGAAGGTGA
TTGAGTCTGTGAGCTCTGATGGCCATGAGTACATCTATGTGGACCCCATGCAGCTGCCCTACGA
TTCCACCTGGGAACTGCCACGGGACCAGCTTGTGCTTGGACGCACCCTCGGCTCTGGGGCCTTT
GGGCAGGTGGTGGAGGCCACGGCTCATGGCCTGAGCCATTCCCAGGCCACCATGAAAGTGGCTG
TCAAGATGCTGAAATCCACAGCCCGCAGCAGTGAGAAGCAAGCCCTCATGTCAGAGCTGAAGAT
CATGAGCCACCTGGGACCCCACCTGAACGTGGTCAACCTGCTGGGGGCCTGCACCCAGGGAGGC
CCCATCTACATCATCACGGAGTACTGCCGCTATGGGGACCTGGTGGACTACCTGCACCGCAACA
AGCACAGCTTCCTGCAGCACCACTCGGACAAGCACCGCCCACCCAGTGCTGAGCTCTACAGCAA
CGCCCTGCCCACGGGGCTCCCTCTGCCCAGCCCCATGTCCCTGACTGGGGAGAGCGATGGTGGC
TACATGGACATGAGCAAGGACGAGTCAGTGGACTACGTGCCCATGCTGGACATGAAAGGAGACG
TCAAATACGCAGACATCGAATCCTCCAACTACATGGCCCCTTATGATAACTACGTCCCCTCTGC
TCCTGAGAGGACTTGTCGGGCCACTTTGATCAACGAGTCCCCAGTGCTTAGCTACACAGACCTT
GTGGGCTTCAGCTACCAGGTGGCCAATGGCATGGAGTTCCTGGCCTCTAAGAATTGTGTTCATC
GGGACCTGGCAGCCAGGAATGTGCTCATCTGTGAGGGCAAGCTGGTCAAGATCTGTGACTTTGG
CCTGGCTCGAGACATCATGCGGGACTCAAACTACATCTCCAAAGGCAGTACCTTCCTACCTCTG
AAGTGGATGGCCCCAGAGAGCATCTTCAATAGCCTCTACACCACCCTGAGCGATGTGTGGTCCT
TCGGGATCCTGCTCTGGGAGATCTTCACATTGGGTGGCACCCCTTACCCGGAGCTGCCCATGAA
CGAGCAGTTCTACAATGCCATCAAGCGCGGTTACCGCATGGCACAGCCGGCTCACGCCTCTGCT
GAGATCTACGAGATCATGCAGAAGTGCTGGGAGGAGAAGTTTGAGGTTCGGCCCCCCTTCTCCC
AGCTGGTGCTGCTCCTGGAGAGGCTGCTTGGCGAGGGCTACAGAAAGAAGTACCAGCAGGTGGA
CGAGGAGTTTCTGAGGAGTGACCACCCAGCCATCCTGAGGTCCCAAGCCCGCTTCCCTGGATTC
CACAGCCTCCGATCTCCCCTGGACACCAGCTCTGTCCTCTACACTGCCGTGCAGCCCAGCGAGG
GTGACAACGACTATATCATCCCCCTGCCTGACCCCAAACCAGAGGCCGCTGATGAGGGTCTGCT
GGAGGGTTCCCCCAGCCTCGCCAGCTCCACCCTGAATGAAGCCAACACCTCCTCTACCATCTCC
TGTGACAGTCCTCTCGACCCCCAGGAAGAACCAGAGCCAGAACCCCTGCCCCAGCCCCAGGGGG
ACTCCCAGATGGAGCTGGAGCCACCAATGGATGCAGGCTGCCCTGGGCCTCGGGCCGAAGCAGA
GGACAGCTTTCTGTAG

hide sequence

RefSeq Acc Id:

XM_021725680 ⟹ XP_021581355

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	143,202,843 - 143,225,815 (+)	NCBI
SpeTri2.0	NW_004936504	4,776,854 - 4,799,789 (+)	NCBI

Sequence:

show sequence

GACTCCCATCTACCTCTGGCCTACTTCCTCTCGAGGCTGCAGACAGAACCATGCATACCTGGCT
ATGGGTGACTATTTGGGATCCAAGGACATCATGCAGCTTCCAGGTGTGACGCCAGCTCTGGTCC
TCAGAGGCCAGTTGCTGTTGCTGCCCATGCTATTGCTGCTAGGTCCACAGACCTCCCAGGGCCT
GACCATCATGCCCCCGGGGCCAGAGCTTGTACTTAATCTCTCAAGTACCTTTGTTCTGACCTGC
CTGGGTTCAGCTCCAGTGGTGTGGGAACGGCTATCTCAGGTGCCTCAGCAGAAAGTGTCCAGGA
CCCAGGAGGGCACCTTCTCCAGCATGCTAACCCTGGCCAATGTCACTGGAGGTGACACAGGAGA
GTACTTTTGTACCTACAACAGCTCCCTTGGGCGGGAGCCCAGTGAGCGGAAGCGGCTCTACATC
TTTGTGCCTGATCCCTCCATGGGCTTCCTCCCTATGGAGCCCGAGGACCTATTCATCTTTCTCA
CGGAAATAACTGAGACCACAATTCCATGCCGAGTGACAGACCCCCAGCTAGTGGTGACACTGCA
TGAGAAGAAAGAGGACATCCCGCTGCCTATCCCCTATGACCACCAACGAGGCTTCTCTGGTACC
TTTGAGGACAAGACCTATATCTGCCGAACCACCATTGGGGAGAGGGAAGTGGATTCCGATGCCT
ATTACGTCTACAGCCTCCAGGTTTCCACCATCAATGTCTCAGTGAATGCAGTGCAGACTGTGGT
TCGCCAGGGTGAGAACATTACCATCATGTGCATTGTGACGGGGAATGAGGTGGTCAATTTTGAG
TGGACCTACCCCCGCATGGAGAGTGGGCGCCTCGTAGAGCCAGTGACAGATTTCCTCTTTGATG
TGCCCTCCCACATTCGCTCCATCCTCCACATCCCCAGTGCTGAGCTGGATGACTCAGGGACCTA
CATCTGCAATGTGTCAGAGAGTGTGAATGACCATCGAGATGAAAAGGCCATCAATGTCACTGTG
GTCGAGAGTGGCTACGTGCGGCTTCTGGGAGACTTGGGCGCTATACAAATTGCTGAGCTGCACA
GGAGTCGGACACTACAAGTGGTGTTCGAAGCCTACCCGCCACCTACTGTGCTGTGGTTCAAGGA
CAACCGCACCCTGGGTGATTCCAGCGCCGGCGAGATCGCCCTGTCCACGCGCAATGTGTCTGAG
ACCCGATATGTATCAGAACTGACACTGGTGCGGGTGAAGGTGGCAGAGGCTGGCTACTATACCA
TGCGGGCCTTCCATGAGGATGCTGAGGCCCAACTTTCCTTCAAGCTGCAGGTCAATGTCCCTGT
CCGTGTGCTGGAGCTGAGCGAGAGTCACCCTGCCAACGGGGAGCAGACAGTCCGCTGTCGTGGC
CGAGGCATGCCCCAGCCAAATATCACCTGGTCTACCTGCAGAGACCTCAAAAGGTGTCCACGCG
AGCTGCCGCCCACACCGCTGGGGAACAGTTCCGAGGAGGAAAGCCAGTTGGAGACTAATGTGAC
ATACTGGGCGGAGGAGCAGGAATATGAGGTGGTGAGCACGCTGCGCCTGCGCCACGTGGATCAG
CCACTGTCGGTGCGCTGCATGCTGCACAACCCACTGGGCCAGGATGTGCAGGAGGTTACCGTGG
TGCCGCATTCCCTCCCCTTCAAGGTGGTGGTGATCTCAGCCATCCTGGCCTTGGTGGTTCTCAC
AATCATCTCCCTCATCATCCTCATCATGCTCTGGCAGAAGAAGCCACGCTATGAGATTCGATGG
AAGGTGATTGAGTCTGTGAGCTCTGATGGCCATGAGTACATCTATGTGGACCCCATGCAGCTGC
CCTACGATTCCACCTGGGAACTGCCACGGGACCAGCTTGTGCTTGGACGCACCCTCGGCTCTGG
GGCCTTTGGGCAGGTGGTGGAGGCCACGGCTCATGGCCTGAGCCATTCCCAGGCCACCATGAAA
GTGGCTGTCAAGATGCTGAAATCCACAGCCCGCAGCAGTGAGAAGCAAGCCCTCATGTCAGAGC
TGAAGATCATGAGCCACCTGGGACCCCACCTGAACGTGGTCAACCTGCTGGGGGCCTGCACCCA
GGGAGGCCCCATCTACATCATCACGGAGTACTGCCGCTATGGGGACCTGGTGGACTACCTGCAC
CGCAACAAGCACAGCTTCCTGCAGCACCACTCGGACAAGCACCGCCCACCCAGTGCTGAGCTCT
ACAGCAACGCCCTGCCCACGGGGCTCCCTCTGCCCAGCCCCATGTCCCTGACTGGGGAGAGCGA
TGGTGGCTACATGGACATGAGCAAGGACGAGTCAGTGGACTACGTGCCCATGCTGGACATGAAA
GGAGACGTCAAATACGCAGACATCGAATCCTCCAACTACATGGCCCCTTATGATAACTACGTCC
CCTCTGCTCCTGAGAGGACTTGTCGGGCCACTTTGATCAACGAGTCCCCAGTGCTTAGCTACAC
AGACCTTGTGGGCTTCAGCTACCAGGTGGCCAATGGCATGGAGTTCCTGGCCTCTAAGAATTGT
GTTCATCGGGACCTGGCAGCCAGGAATGTGCTCATCTGTGAGGGCAAGCTGGTCAAGATCTGTG
ACTTTGGCCTGGCTCGAGACATCATGCGGGACTCAAACTACATCTCCAAAGGCAGTACCTTCCT
ACCTCTGAAGTGGATGGCCCCAGAGAGCATCTTCAATAGCCTCTACACCACCCTGAGCGATGTG
TGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACATTGGGTGGCACCCCTTACCCGGAGCTGC
CCATGAACGAGCAGTTCTACAATGCCATCAAGCGCGGTTACCGCATGGCACAGCCGGCTCACGC
CTCTGCTGAGATCTACGAGATCATGCAGAAGTGCTGGGAGGAGAAGTTTGAGGTTCGGCCCCCC
TTCTCCCAGCTGGTGCTGCTCCTGGAGAGGCTGCTTGGCGAGGGCTACAGAAAGAAGTACCAGC
AGGTGGACGAGGAGTTTCTGAGGAGTGACCACCCAGCCATCCTGAGGTCCCAAGCCCGCTTCCC
TGGATTCCACAGCCTCCGATCTCCCCTGGACACCAGCTCTGTCCTCTACACTGCCGTGCAGCCC
AGCGAGGGTGACAACGACTATATCATCCCCCTGCCTGACCCCAAACCAGAGGCCGCTGATGAGG
GTCTGCTGGAGGGTTCCCCCAGCCTCGCCAGCTCCACCCTGAATGAAGCCAACACCTCCTCTAC
CATCTCCTGTGACAGTCCTCTCGACCCCCAGGAAGAACCAGAGCCAGAACCCCTGCCCCAGCCC
CAGGGGGACTCCCAGATGGAGCTGGAGCCACCAATGGATGCAGGCTGCCCTGGGCCTCGGGCCG
AAGCAGAGGACAGCTTTCTGTAGGGGCTGGCCCCCACCCCGTGCCACCAGAAGCTCCTCTTCTG
CCACCAGGCCACAGCCCCCAGGCCTGGCATCCTGTGAGCCATGCTGCTCCTGCCAGCTGTCCCA
GATGGAAGGCTCTGTCCCTGCCACACTGCTCCCCAGGCCCTGGGGCTGGCTCAGGAGGCCAGAG
AACTAACTGCAGGACCATGCCCAGCCTCTGCCTCAGGGAGGCCATGTGACTGAGCCAGGGTCCC
TCCCAGGGGACCCAGTTTCCCAATGCACAAGATGAGACATTGAACTTGGTAGTTCACAGTCTAC
CTGGGAGTCTCCCTGGCTGACAAGTGGGGAGGCTGGAATCTGGGGGAGCTTCCTGGGGGAGTGA
GGGGGTCAGTAACCTCTCTCTGTTCAGCCAGCTGTCCCTCAAGGAGTCCCAGGCCTGTCCCCAC
ACTTCCATCTGCCCAGGAGCTGGGGAAGAAACCCTGGCACCCCTGGCTCCTGGCTGAGCTGGGC
CTGCCCTGGCCAGTGTTGCTTCACTCTGAAGCCACGTCCCCTGACACTAGTCTCTGCTTTCCCA
GGCCCTAGCAGGTCTGGGGCCAGCCATGCTTAATTAATGCTGTAATTGTTGCTGGGACTGAACC
AAGTACAGCACTCCCTGGCTTGCAGACCCAGCCCAGGACACTCGGGGCACACTGGCTCTGGACA
GTGCCCATGTCTTCCAGGCCCCTTGGGTTCTGAGGCTTTTTCTCATCGTCCCTGGTTACAGGCC
CAGTGGATCCTGCATCTGAAACAAATGTGTTGATGTGCCAGCATTATGTCCACATGTGCACACC
AGTAGGTGGCCCTGACTCTGCATTGGACCTGCTGTGACCTTGGAGGAATCCCTTGCCCTCTCTG
GGCCCATTTTCCCCTTTGAAGAGTGAGCAAGTTGGACTCATTCACTCTGAGTGCCCTGTCAACA
TTAATAATCCAGAATATTCCTGGGGTTTTCATGCTTGTCCAGATGAAGCAAGGTCAAGTACCCT
AAACTTCCTAGTTGGGGGGCTGCTGGCCTCTGGGGAGATTCCAAATGACACATCACAGTCCGGG
CATTCAGGTACGTGACCCTTCCTCAGCCCCAAATGCAGCTGTGATGACCTTGGCTTGGAGTGAC
AGTCAGTGCCCAGGAAAGCCCCCAGCAGCTGCTCCAGGGACACGGGAGGACCACGAGACCCCCT
TGAGCACCCACGATGAACTCTGGAGATATCCTGGGCAAGGGGGCAGGGAGGGAGGTCATTACCT
CATGCAGCCCAACACTGCCCCAAGGTATGTGCCACAGAGAGAATGGACAGTAAGGACGATTGTG
TCCCATGAAGGACAAGAGCCTCAGGATGTGCACCCCAGGAAAGGAGCACAAGAGGTGGGCACTT
TGGGGGTTTCCTCCTTAACTGCTGGCTGCTCCATCCTGGAGGGAGTACCTGGTGGAGTAGGGTC
TTGTCACTGCCCAGGTGATACCTCACCGCCCTGAAACCAGTGGGCATTGGCCATTACAGGGCAG
TGAGGGATATGGTCACTTCGCCCAGGAGGGGGAGGGCTGGCCAGGGGATAAGGCAAGGTCAGCC
CTCCTGGACACAGTCACCAAGCTAGTTGGTGTCTCCCAACCCGAGGGCCCCAGAGACTCCCCAA
GGAGAGAGGGGGAGTCAGTCTTCACTACGGTACCAAAGATATAATCACCTACGTTTGTTTACAA
GTATTTTTAGGACTCACATTAACTCACATGTATACATCAAAGTGCTATTTTGTATGCTGTTCAG
TTTTCCTATCTGTGTACTTTTTTTTAAGGGAAAGATTTTAATATTAAACTGGGTGCTTCCACTC
AC

hide sequence

RefSeq Acc Id:

XM_021725681 ⟹ XP_021581356

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	143,188,255 - 143,225,815 (+)	NCBI
SpeTri2.0	NW_004936504	4,762,655 - 4,797,954 (+)	NCBI

Sequence:

show sequence

TGGAGGGGGTGACAGCCCACAGCCTGGGACCCTGCCCACAACAGAAGCCATGAGCGGAGAGCTC
TCTGTCTCCCTCTTGGACAGGACCTTCTGTGGAATCTTGGGCAAACTTCTTTCCTTCTCAGAGC
CTTGGTTTCCCCATTTGGACACCGGATGTGGAGGACATCATGCAGCTTCCAGGTGTGACGCCAG
CTCTGGTCCTCAGAGGCCAGTTGCTGTTGCTGCCCATGCTATTGCTGCTAGGTCCACAGACCTC
CCAGGGCCTGACCATCATGCCCCCGGGGCCAGAGCTTGTACTTAATCTCTCAAGTACCTTTGTT
CTGACCTGCCTGGGTTCAGCTCCAGTGGTGTGGGAACGGCTATCTCAGGTGCCTCAGCAGAAAG
TGTCCAGGACCCAGGAGGGCACCTTCTCCAGCATGCTAACCCTGGCCAATGTCACTGGAGGTGA
CACAGGAGAGTACTTTTGTACCTACAACAGCTCCCTTGGGCGGGAGCCCAGTGAGCGGAAGCGG
CTCTACATCTTTGTGCCTGATCCCTCCATGGGCTTCCTCCCTATGGAGCCCGAGGACCTATTCA
TCTTTCTCACGGAAATAACTGAGACCACAATTCCATGCCGAGTGACAGACCCCCAGCTAGTGGT
GACACTGCATGAGAAGAAAGAGGACATCCCGCTGCCTATCCCCTATGACCACCAACGAGGCTTC
TCTGGTACCTTTGAGGACAAGACCTATATCTGCCGAACCACCATTGGGGAGAGGGAAGTGGATT
CCGATGCCTATTACGTCTACAGCCTCCAGGTTTCCACCATCAATGTCTCAGTGAATGCAGTGCA
GACTGTGGTTCGCCAGGGTGAGAACATTACCATCATGTGCATTGTGACGGGGAATGAGGTGGTC
AATTTTGAGTGGACCTACCCCCGCATGGAGAGTGGGCGCCTCGTAGAGCCAGTGACAGATTTCC
TCTTTGATGTGCCCTCCCACATTCGCTCCATCCTCCACATCCCCAGTGCTGAGCTGGATGACTC
AGGGACCTACATCTGCAATGTGTCAGAGAGTGTGAATGACCATCGAGATGAAAAGGCCATCAAT
GTCACTGTGGTCGAGAGTGGCTACGTGCGGCTTCTGGGAGACTTGGGCGCTATACAAATTGCTG
AGCTGCACAGGAGTCGGACACTACAAGTGGTGTTCGAAGCCTACCCGCCACCTACTGTGCTGTG
GTTCAAGGACAACCGCACCCTGGGTGATTCCAGCGCCGGCGAGATCGCCCTGTCCACGCGCAAT
GTGTCTGAGACCCGATATGTATCAGAACTGACACTGGTGCGGGTGAAGGTGGCAGAGGCTGGCT
ACTATACCATGCGGGCCTTCCATGAGGATGCTGAGGCCCAACTTTCCTTCAAGCTGCAGGTCAA
TGTCCCTGTCCGTGTGCTGGAGCTGAGCGAGAGTCACCCTGCCAACGGGGAGCAGACAGTCCGC
TGTCGTGGCCGAGGCATGCCCCAGCCAAATATCACCTGGTCTACCTGCAGAGACCTCAAAAGGT
GTCCACGCGAGCTGCCGCCCACACCGCTGGGGAACAGTTCCGAGGAGGAAAGCCAGTTGGAGAC
TAATGTGACATACTGGGCGGAGGAGCAGGAATATGAGGTGGTGAGCACGCTGCGCCTGCGCCAC
GTGGATCAGCCACTGTCGGTGCGCTGCATGCTGCACAACCCACTGGGCCAGGATGTGCAGGAGG
TTACCGTGGTGCCGCATTCCCTCCCCTTCAAGGTGGTGGTGATCTCAGCCATCCTGGCCTTGGT
GGTTCTCACAATCATCTCCCTCATCATCCTCATCATGCTCTGGCAGAAGAAGCCACGCTATGAG
ATTCGATGGAAGGTGATTGAGTCTGTGAGCTCTGATGGCCATGAGTACATCTATGTGGACCCCA
TGCAGCTGCCCTACGATTCCACCTGGGAACTGCCACGGGACCAGCTTGTGCTTGGACGCACCCT
CGGCTCTGGGGCCTTTGGGCAGGTGGTGGAGGCCACGGCTCATGGCCTGAGCCATTCCCAGGCC
ACCATGAAAGTGGCTGTCAAGATGCTGAAATCCACAGCCCGCAGCAGTGAGAAGCAAGCCCTCA
TGTCAGAGCTGAAGATCATGAGCCACCTGGGACCCCACCTGAACGTGGTCAACCTGCTGGGGGC
CTGCACCCAGGGAGGCCCCATCTACATCATCACGGAGTACTGCCGCTATGGGGACCTGGTGGAC
TACCTGCACCGCAACAAGCACAGCTTCCTGCAGCACCACTCGGACAAGCACCGCCCACCCAGTG
CTGAGCTCTACAGCAACGCCCTGCCCACGGGGCTCCCTCTGCCCAGCCCCATGTCCCTGACTGG
GGAGAGCGATGGTGGCTACATGGACATGAGCAAGGACGAGTCAGTGGACTACGTGCCCATGCTG
GACATGAAAGGAGACGTCAAATACGCAGACATCGAATCCTCCAACTACATGGCCCCTTATGATA
ACTACGTCCCCTCTGCTCCTGAGAGGACTTGTCGGGCCACTTTGATCAACGAGTCCCCAGTGCT
TAGCTACACAGACCTTGTGGGCTTCAGCTACCAGGTGGCCAATGGCATGGAGTTCCTGGCCTCT
AAGAATTGTGTTCATCGGGACCTGGCAGCCAGGAATGTGCTCATCTGTGAGGGCAAGCTGGTCA
AGATCTGTGACTTTGGCCTGGCTCGAGACATCATGCGGGACTCAAACTACATCTCCAAAGGCAG
TACCTTCCTACCTCTGAAGTGGATGGCCCCAGAGAGCATCTTCAATAGCCTCTACACCACCCTG
AGCGATGTGTGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACATTGGGTGGCACCCCTTACC
CGGAGCTGCCCATGAACGAGCAGTTCTACAATGCCATCAAGCGCGGTTACCGCATGGCACAGCC
GGCTCACGCCTCTGCTGAGATCTACGAGATCATGCAGAAGTGCTGGGAGGAGAAGTTTGAGGTT
CGGCCCCCCTTCTCCCAGCTGGTGCTGCTCCTGGAGAGGCTGCTTGGCGAGGGCTACAGAAAGA
AGTACCAGCAGGTGGACGAGGAGTTTCTGAGGAGTGACCACCCAGCCATCCTGAGGTCCCAAGC
CCGCTTCCCTGGATTCCACAGCCTCCGATCTCCCCTGGACACCAGCTCTGTCCTCTACACTGCC
GTGCAGCCCAGCGAGGGTGACAACGACTATATCATCCCCCTGCCTGACCCCAAACCAGAGGCCG
CTGATGAGGGTCTGCTGGAGGGTTCCCCCAGCCTCGCCAGCTCCACCCTGAATGAAGCCAACAC
CTCCTCTACCATCTCCTGTGACAGTCCTCTCGACCCCCAGGAAGAACCAGAGCCAGAACCCCTG
CCCCAGCCCCAGGGGGACTCCCAGATGGAGCTGGAGCCACCAATGGATGCAGGCTGCCCTGGGC
CTCGGGCCGAAGCAGAGGACAGCTTTCTGTAG

hide sequence

RefSeq Acc Id:

XM_040271876 ⟹ XP_040127810

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	143,206,390 - 143,225,815 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005324224	(Get FASTA)	NCBI Sequence Viewer
	XP_021581355	(Get FASTA)	NCBI Sequence Viewer
	XP_021581356	(Get FASTA)	NCBI Sequence Viewer
	XP_040127810	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000023255.2
	ENSSTOP00000025360.1
GenBank Protein	KAG3265976	(Get FASTA)	NCBI Sequence Viewer
	KAG3265977	(Get FASTA)	NCBI Sequence Viewer
	KAG3265978	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005324224 ⟸ XM_005324167
- Peptide Label:	isoform X2
- UniProtKB:	I3NFV8 (UniProtKB/TrEMBL), A0A287CVL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGEDIMQLPGVTPALVLRGQLLLLPMLLLLGPQTSQGLTIMPPGPELVLNLSSTFVLTCLGSA PVVWERLSQVPQQKVSRTQEGTFSSMLTLANVTGGDTGEYFCTYNSSLGREPSERKRLYIFVPD PSMGFLPMEPEDLFIFLTEITETTIPCRVTDPQLVVTLHEKKEDIPLPIPYDHQRGFSGTFEDK TYICRTTIGEREVDSDAYYVYSLQVSTINVSVNAVQTVVRQGENITIMCIVTGNEVVNFEWTYP RMESGRLVEPVTDFLFDVPSHIRSILHIPSAELDDSGTYICNVSESVNDHRDEKAINVTVVESG YVRLLGDLGAIQIAELHRSRTLQVVFEAYPPPTVLWFKDNRTLGDSSAGEIALSTRNVSETRYV SELTLVRVKVAEAGYYTMRAFHEDAEAQLSFKLQVNVPVRVLELSESHPANGEQTVRCRGRGMP QPNITWSTCRDLKRCPRELPPTPLGNSSEEESQLETNVTYWAEEQEYEVVSTLRLRHVDQPLSV RCMLHNPLGQDVQEVTVVPHSLPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIE SVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVK MLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTQGGPIYIITEYCRYGDLVDYLHRNKH SFLQHHSDKHRPPSAELYSNALPTGLPLPSPMSLTGESDGGYMDMSKDESVDYVPMLDMKGDVK YADIESSNYMAPYDNYVPSAPERTCRATLINESPVLSYTDLVGFSYQVANGMEFLASKNCVHRD LAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFG ILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPAHASAEIYEIMQKCWEEKFEVRPPFSQL VLLLERLLGEGYRKKYQQVDEEFLRSDHPAILRSQARFPGFHSLRSPLDTSSVLYTAVQPSEGD NDYIIPLPDPKPEAADEGLLEGSPSLASSTLNEANTSSTISCDSPLDPQEEPEPEPLPQPQGDS QMELEPPMDAGCPGPRAEAEDSFL hide sequence

RefSeq Acc Id:	XP_021581356 ⟸ XM_021725681
- Peptide Label:	isoform X3
- UniProtKB:	A0A287CVL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQLPGVTPALVLRGQLLLLPMLLLLGPQTSQGLTIMPPGPELVLNLSSTFVLTCLGSAPVVWER LSQVPQQKVSRTQEGTFSSMLTLANVTGGDTGEYFCTYNSSLGREPSERKRLYIFVPDPSMGFL PMEPEDLFIFLTEITETTIPCRVTDPQLVVTLHEKKEDIPLPIPYDHQRGFSGTFEDKTYICRT TIGEREVDSDAYYVYSLQVSTINVSVNAVQTVVRQGENITIMCIVTGNEVVNFEWTYPRMESGR LVEPVTDFLFDVPSHIRSILHIPSAELDDSGTYICNVSESVNDHRDEKAINVTVVESGYVRLLG DLGAIQIAELHRSRTLQVVFEAYPPPTVLWFKDNRTLGDSSAGEIALSTRNVSETRYVSELTLV RVKVAEAGYYTMRAFHEDAEAQLSFKLQVNVPVRVLELSESHPANGEQTVRCRGRGMPQPNITW STCRDLKRCPRELPPTPLGNSSEEESQLETNVTYWAEEQEYEVVSTLRLRHVDQPLSVRCMLHN PLGQDVQEVTVVPHSLPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIESVSSDG HEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVKMLKSTA RSSEKQALMSELKIMSHLGPHLNVVNLLGACTQGGPIYIITEYCRYGDLVDYLHRNKHSFLQHH SDKHRPPSAELYSNALPTGLPLPSPMSLTGESDGGYMDMSKDESVDYVPMLDMKGDVKYADIES SNYMAPYDNYVPSAPERTCRATLINESPVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNV LICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEI FTLGGTPYPELPMNEQFYNAIKRGYRMAQPAHASAEIYEIMQKCWEEKFEVRPPFSQLVLLLER LLGEGYRKKYQQVDEEFLRSDHPAILRSQARFPGFHSLRSPLDTSSVLYTAVQPSEGDNDYIIP LPDPKPEAADEGLLEGSPSLASSTLNEANTSSTISCDSPLDPQEEPEPEPLPQPQGDSQMELEP PMDAGCPGPRAEAEDSFL hide sequence

RefSeq Acc Id:	XP_021581355 ⟸ XM_021725680
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CVL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDYLGSKDIMQLPGVTPALVLRGQLLLLPMLLLLGPQTSQGLTIMPPGPELVLNLSSTFVLTC LGSAPVVWERLSQVPQQKVSRTQEGTFSSMLTLANVTGGDTGEYFCTYNSSLGREPSERKRLYI FVPDPSMGFLPMEPEDLFIFLTEITETTIPCRVTDPQLVVTLHEKKEDIPLPIPYDHQRGFSGT FEDKTYICRTTIGEREVDSDAYYVYSLQVSTINVSVNAVQTVVRQGENITIMCIVTGNEVVNFE WTYPRMESGRLVEPVTDFLFDVPSHIRSILHIPSAELDDSGTYICNVSESVNDHRDEKAINVTV VESGYVRLLGDLGAIQIAELHRSRTLQVVFEAYPPPTVLWFKDNRTLGDSSAGEIALSTRNVSE TRYVSELTLVRVKVAEAGYYTMRAFHEDAEAQLSFKLQVNVPVRVLELSESHPANGEQTVRCRG RGMPQPNITWSTCRDLKRCPRELPPTPLGNSSEEESQLETNVTYWAEEQEYEVVSTLRLRHVDQ PLSVRCMLHNPLGQDVQEVTVVPHSLPFKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRW KVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQATMK VAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTQGGPIYIITEYCRYGDLVDYLH RNKHSFLQHHSDKHRPPSAELYSNALPTGLPLPSPMSLTGESDGGYMDMSKDESVDYVPMLDMK GDVKYADIESSNYMAPYDNYVPSAPERTCRATLINESPVLSYTDLVGFSYQVANGMEFLASKNC VHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNSLYTTLSDV WSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPAHASAEIYEIMQKCWEEKFEVRPP FSQLVLLLERLLGEGYRKKYQQVDEEFLRSDHPAILRSQARFPGFHSLRSPLDTSSVLYTAVQP SEGDNDYIIPLPDPKPEAADEGLLEGSPSLASSTLNEANTSSTISCDSPLDPQEEPEPEPLPQP QGDSQMELEPPMDAGCPGPRAEAEDSFL hide sequence

RefSeq Acc Id:	XP_040127810 ⟸ XM_040271876
- Peptide Label:	isoform X4
- UniProtKB:	A0A287CVL0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000023255 ⟸ ENSSTOT00000024810

Ensembl Acc Id:

ENSSTOP00000025360 ⟸ ENSSTOT00000039357

Protein Domains

Ig-like Protein kinase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000025211	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024810.2	UniProtKB/TrEMBL
	ENSSTOT00000039357.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Immunoglobulin	UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/TrEMBL
	PGFRB	UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	RTK	UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Tyr_kinase_AS	UniProtKB/TrEMBL
	Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Tyr_kinase_rcpt_3_CS	UniProtKB/TrEMBL
NCBI Gene	Pdgfrb	ENTREZGENE
PANTHER	PLATELET-DERIVED GROWTH FACTOR RECEPTOR BETA	UniProtKB/TrEMBL
	TYROSINE-PROTEIN KINASE RECEPTOR	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	PF00047	UniProtKB/TrEMBL
	PK_Tyr_Ser-Thr	UniProtKB/TrEMBL
PIRSF	Beta-PDGF_receptor	UniProtKB/TrEMBL
	TyrPK_CSF1-R	UniProtKB/TrEMBL
PRINTS	VEGFRECEPTOR	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_TYR	UniProtKB/TrEMBL
	RECEPTOR_TYR_KIN_III	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
	TyrKc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF56112	UniProtKB/TrEMBL
UniProt	A0A287CVL0	ENTREZGENE, UniProtKB/TrEMBL
	I3NFV8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Annotations - PID (archival)