Fut10 (fucosyltransferase 10) - Rat Genome Database

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Gene: Fut10 (fucosyltransferase 10) Ictidomys tridecemlineatus
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Symbol: Fut10
Name: fucosyltransferase 10
RGD ID: 12487499
Description: ENCODES a protein that exhibits alpha-(1->3)-fucosyltransferase activity (inferred); fucosyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); neuronal stem cell population maintenance (ortholog); oligosaccharide biosynthetic process (ortholog); FOUND IN endoplasmic reticulum (inferred); Golgi apparatus (inferred); Golgi cisterna membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-(1,3)-fucosyltransferase 10; alpha-(1,3)-fucosyltransferase 10-like; fucosyltransferase 10 (alpha (1,3) fucosyltransferase); LOC101967434; LOC106144657
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,189,024 - 54,291,012 (+)NCBI
SpeTri2.0NW_004936766449,469 - 551,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Fut10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,189,024 - 54,291,012 (+)NCBI
SpeTri2.0NW_004936766449,469 - 551,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38833,308,061 - 33,473,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl833,370,824 - 33,473,146 (-)EnsemblGRCh38hg38GRCh38
GRCh37833,228,342 - 33,330,664 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36833,347,884 - 33,450,206 (-)NCBINCBI36hg18NCBI36
Build 34833,347,885 - 33,450,206NCBI
Celera832,177,762 - 32,280,374 (-)NCBI
Cytogenetic Map8p12NCBI
HuRef831,760,253 - 31,862,062 (-)NCBIHuRef
CHM1_1833,429,801 - 33,532,130 (-)NCBICHM1_1
T2T-CHM13v2.0833,642,029 - 33,744,498 (-)NCBI
Fut10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39831,677,342 - 31,753,072 (+)NCBIGRCm39mm39
GRCm39 Ensembl831,677,359 - 31,751,766 (+)Ensembl
GRCm38831,187,313 - 31,265,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl831,187,331 - 31,261,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv37832,297,804 - 32,371,955 (+)NCBIGRCm37mm9NCBIm37
MGSCv36832,653,267 - 32,727,418 (+)NCBImm8
Celera832,708,956 - 32,782,186 (+)NCBICelera
Cytogenetic Map8A3NCBI
Fut10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21660,868,761 - 60,958,762 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1660,877,952 - 60,958,683 (-)Ensembl
Rnor_6.01664,623,246 - 64,716,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1664,631,264 - 64,716,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01664,290,270 - 64,373,665 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11664,849,444 - 64,855,465 (-)NCBI
Celera1658,902,644 - 58,956,153 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Fut10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554639,552,387 - 9,629,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554639,552,387 - 9,629,029 (-)NCBIChiLan1.0ChiLan1.0
FUT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1829,872,097 - 29,974,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl829,872,097 - 29,974,524 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0832,685,110 - 32,788,502 (-)NCBIMhudiblu_PPA_v0panPan3
FUT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,186,333 - 31,265,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1631,186,418 - 31,264,963 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1631,719,786 - 31,790,046 (+)NCBI
ROS_Cfam_1.01633,213,318 - 33,293,238 (+)NCBI
ROS_Cfam_1.0 Ensembl1633,213,751 - 33,294,857 (+)Ensembl
UMICH_Zoey_3.11631,318,158 - 31,388,497 (+)NCBI
UNSW_CanFamBas_1.01631,897,315 - 31,967,157 (+)NCBI
UU_Cfam_GSD_1.01631,936,119 - 32,006,196 (+)NCBI
FUT10
(Sus scrofa - pig)
No map positions available.
FUT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1831,325,224 - 31,560,369 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl831,450,567 - 31,551,152 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605210,493,935 - 10,608,672 (+)NCBIVero_WHO_p1.0
Fut10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478010,468,601 - 10,597,078 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013365076   ⟹   XP_013220530
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494354,189,025 - 54,291,012 (+)NCBI
SpeTri2.0NW_004936766449,469 - 551,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269001   ⟹   XP_040124935
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494354,189,322 - 54,291,012 (+)NCBI
RefSeq Acc Id: XM_040269009   ⟹   XP_040124943
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494354,189,171 - 54,291,012 (+)NCBI
RefSeq Acc Id: XM_040269013   ⟹   XP_040124947
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494354,189,024 - 54,290,436 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013220530 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124935 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124943 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124947 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3294849 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013220530   ⟸   XM_013365076
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040124947   ⟸   XM_040269013
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040124943   ⟸   XM_040269009
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124935   ⟸   XM_040269001
- Peptide Label: isoform X1
Protein Domains
Glyco_tran_10_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027659 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000023942 ENTREZGENE
  ENSSTOP00000023942.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021290.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11660 UniProtKB/TrEMBL
InterPro Alpha-1_3-FUT_met UniProtKB/TrEMBL
  Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_trans_10 UniProtKB/TrEMBL
  GT10-like_C_sf UniProtKB/TrEMBL
NCBI Gene LOC106144657 ENTREZGENE
PANTHER PTHR11929 UniProtKB/TrEMBL
Pfam Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_transf_10 UniProtKB/TrEMBL
PIRSF Alpha1_3FUT_met UniProtKB/TrEMBL
UniProt I3NHU5_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-14 Fut10  fucosyltransferase 10  LOC101967434  alpha-(1,3)-fucosyltransferase 10  Data Merged 737654 PROVISIONAL
2017-07-13 Fut10  fucosyltransferase 10  LOC106144657  alpha-(1,3)-fucosyltransferase 10-like  Symbol and/or name change 5135510 APPROVED