Lyplal1 (lysophospholipase like 1) - Rat Genome Database

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Gene: Lyplal1 (lysophospholipase like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Lyplal1
Name: lysophospholipase like 1
RGD ID: 12486729
Description: INVOLVED IN negative regulation of Golgi to plasma membrane protein transport (ortholog); protein depalmitoylation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Holt-Oram syndrome (ortholog); Loeys-Dietz syndrome 4 (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lysophospholipase like 1, transcript variant X1; lysophospholipase like 1, transcript variant X2; lysophospholipase like 1, transcript variant X3; lysophospholipase-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934457,685,177 - 57,712,354 (-)NCBI
SpeTri2.0NW_0049366502,933,661 - 2,960,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Lyplal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934457,685,177 - 57,712,354 (-)NCBI
SpeTri2.0NW_0049366502,933,661 - 2,960,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPLAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1219,173,869 - 219,212,865 (+)EnsemblGRCh38hg38GRCh38
GRCh381219,173,850 - 219,445,121 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371219,347,220 - 219,386,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361217,413,844 - 217,451,783 (+)NCBINCBI36hg18NCBI36
Build 341215,735,617 - 215,773,553NCBI
Celera1192,564,906 - 192,603,940 (+)NCBI
Cytogenetic Map1q41NCBI
HuRef1190,016,930 - 190,055,957 (+)NCBIHuRef
CHM1_11220,620,005 - 220,659,032 (+)NCBICHM1_1
Lyplal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,819,929 - 185,849,507 (-)NCBIGRCm39mm39
GRCm39 Ensembl1185,819,928 - 185,849,507 (-)Ensembl
GRCm381186,087,732 - 186,117,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,087,731 - 186,117,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv371187,911,611 - 187,941,189 (-)NCBIGRCm37mm9NCBIm37
MGSCv361187,788,668 - 187,818,098 (-)NCBImm8
Celera1193,030,160 - 193,053,254 (-)NCBICelera
Cytogenetic Map1H5NCBI
Lyplal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21397,626,451 - 97,657,901 (-)NCBI
Rnor_6.0 Ensembl13104,049,386 - 104,080,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013104,049,263 - 104,080,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013108,706,787 - 108,738,098 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413102,143,174 - 102,171,752 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113102,332,339 - 102,360,879 (-)NCBI
Celera1397,136,739 - 97,168,192 (-)NCBICelera
Cytogenetic Map13q26NCBI
Lyplal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555204,251,957 - 4,281,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555204,251,863 - 4,281,775 (-)NCBIChiLan1.0ChiLan1.0
LYPLAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11199,586,920 - 199,625,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1199,586,920 - 199,625,423 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01194,737,158 - 194,775,853 (+)NCBIMhudiblu_PPA_v0panPan3
LYPLAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13814,100,818 - 14,137,292 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3814,100,698 - 14,268,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3814,143,532 - 14,180,609 (+)NCBI
ROS_Cfam_1.03814,136,744 - 14,173,896 (+)NCBI
UMICH_Zoey_3.13814,146,280 - 14,183,361 (+)NCBI
UNSW_CanFamBas_1.03814,489,895 - 14,526,974 (+)NCBI
UU_Cfam_GSD_1.03814,802,107 - 14,838,748 (+)NCBI
LYPLAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl108,946,487 - 9,062,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1108,946,463 - 9,061,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21011,029,585 - 11,088,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPLAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12510,370,715 - 10,408,807 (-)NCBI
ChlSab1.1 Ensembl2510,370,814 - 10,408,767 (-)Ensembl
Vero_WHO_p1.0NW_02366605510,766,878 - 10,806,116 (-)NCBI
Lyplal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248353,023,151 - 3,052,826 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005335867   ⟹   XP_005335924
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,712,354 (-)NCBI
SpeTri2.0NW_0049366502,933,661 - 2,960,558 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733661   ⟹   XP_021589336
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,710,990 (-)NCBI
SpeTri2.0NW_0049366502,933,661 - 2,960,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733662   ⟹   XP_021589337
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,712,006 (-)NCBI
SpeTri2.0NW_0049366502,933,661 - 2,960,396 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277572   ⟹   XP_040133506
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,712,072 (-)NCBI
RefSeq Acc Id: XM_040277573   ⟹   XP_040133507
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,712,172 (-)NCBI
RefSeq Acc Id: XM_040277574   ⟹   XP_040133508
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,712,073 (-)NCBI
RefSeq Acc Id: XM_040277575   ⟹   XP_040133509
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934457,685,177 - 57,711,320 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005335924   ⟸   XM_005335867
- Peptide Label: isoform X3
- UniProtKB: I3NDY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589337   ⟸   XM_021733662
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021589336   ⟸   XM_021733661
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040133507   ⟸   XM_040277573
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040133508   ⟸   XM_040277574
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040133506   ⟸   XM_040277572
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040133509   ⟸   XM_040277575
- Peptide Label: isoform X2
Protein Domains
Abhydrolase_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025167 ENTREZGENE
Ensembl Protein ENSSTOP00000022577 ENTREZGENE
NCBI Gene Lyplal1 ENTREZGENE
UniProt I3NDY0 ENTREZGENE