Gp6 (glycoprotein VI platelet) - Rat Genome Database

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Gene: Gp6 (glycoprotein VI platelet) Ictidomys tridecemlineatus
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Symbol: Gp6
Name: glycoprotein VI platelet
RGD ID: 12486718
Description: ENCODES a protein that exhibits collagen binding (inferred); collagen receptor activity (inferred); protein tyrosine kinase binding (inferred); INVOLVED IN collagen-activated signaling pathway (ortholog); collagen-activated tyrosine kinase receptor signaling pathway (ortholog); platelet aggregation (ortholog); PARTICIPATES IN platelet aggregation pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); acute myocardial infarction (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leukocyte immunoglobulin-like receptor subfamily A member 5; LOC101977074; platelet glycoprotein VI
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,248,412 - 2,263,666 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936886295,950 - 310,614 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,248,412 - 2,263,666 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936886295,950 - 310,614 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,013,705 - 55,038,264 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,013,705 - 55,038,264 (-)EnsemblGRCh38hg38GRCh38
GRCh371955,525,073 - 55,549,632 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,216,885 - 60,241,444 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,216,888 - 60,241,444NCBI
Celera1952,564,628 - 52,589,432 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,846,650 - 51,873,103 (-)NCBIHuRef
CHM1_11955,518,809 - 55,543,457 (-)NCBICHM1_1
T2T-CHM13v2.01958,107,037 - 58,139,153 (-)NCBIT2T-CHM13v2.0
Gp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,365,852 - 4,400,849 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,366,964 - 4,400,743 (-)EnsemblGRCm39 Ensembl
GRCm3874,362,853 - 4,397,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,363,965 - 4,397,744 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,320,315 - 4,349,346 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,971,800 - 4,000,831 (-)NCBIMGSCv36mm8
MGSCv3673,710,704 - 3,739,082 (-)NCBIMGSCv36mm8
Celera74,122,265 - 4,147,420 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.52NCBI
Gp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,471,900 - 78,535,374 (+)NCBIGRCr8
mRatBN7.2169,429,232 - 69,492,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,465,789 - 69,491,326 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0172,994,977 - 73,064,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl173,040,901 - 73,064,641 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,481,966 - 75,549,075 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera167,640,031 - 67,699,932 (-)NCBICelera
Cytogenetic Map1q12NCBI
GP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,146,176 - 61,164,299 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,875,491 - 62,894,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,051,138 - 52,071,673 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,746,578 - 60,770,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,746,578 - 60,770,643 (-)Ensemblpanpan1.1panPan2
GP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,586,229 - 102,612,067 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,585,544 - 102,613,905 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,642,923 - 102,670,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,252,299 - 103,280,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,252,324 - 103,280,350 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,872,144 - 102,900,106 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,587,387 - 102,615,351 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,348,282 - 103,376,061 (+)NCBIUU_Cfam_GSD_1.0
GP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1659,214,227 - 59,237,860 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2654,086,654 - 54,109,771 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,614,221 - 47,630,020 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045166,206 - 184,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248322,197,897 - 2,208,019 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040279924   ⟹   XP_040135858
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093492,248,412 - 2,263,666 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040135858 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020437.2
GenBank Protein KAG3255647 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040135858   ⟸   XM_040279924
- UniProtKB: I3N7U1 (UniProtKB/TrEMBL)
Protein Domains
Immunoglobulin subtype


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027491 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026031.2 UniProtKB/TrEMBL
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
NCBI Gene LOC101977074 ENTREZGENE
PANTHER MHC CLASS I NK CELL RECEPTOR UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN VI UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  PF00047 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt I3N7U1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Gp6  glycoprotein VI platelet  LOC101977074  leukocyte immunoglobulin-like receptor subfamily A member 5  Symbol and/or name change 5135510 APPROVED