Lynx1 (Ly6/neurotoxin 1) - Rat Genome Database

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Gene: Lynx1 (Ly6/neurotoxin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Lynx1
Name: Ly6/neurotoxin 1
RGD ID: 12486461
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); acetylcholine receptor inhibitor activity (ortholog); acetylcholine receptor regulator activity (ortholog); INVOLVED IN synaptic transmission, cholinergic (ortholog); ASSOCIATED WITH epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog); holoprosencephaly (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ly-6/neurotoxin-like protein 1; Ly6/neurotoxin 1, transcript variant X1; Ly6/neurotoxin 1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,683,795 - 1,689,172 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364709,109,888 - 9,115,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Lynx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,683,795 - 1,689,172 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364709,109,888 - 9,115,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYNX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388142,771,197 - 142,777,872 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8142,771,197 - 142,777,810 (-)EnsemblGRCh38hg38GRCh38
GRCh378143,852,615 - 143,859,288 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368143,842,758 - 143,856,642 (-)NCBINCBI36Build 36hg18NCBI36
Celera8140,155,485 - 140,169,371 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,097,902 - 139,111,799 (-)NCBIHuRef
CHM1_18143,885,943 - 143,899,792 (-)NCBICHM1_1
T2T-CHM13v2.08143,914,639 - 143,921,325 (-)NCBIT2T-CHM13v2.0
Lynx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,619,705 - 74,624,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1574,619,701 - 74,624,895 (-)EnsemblGRCm39 Ensembl
GRCm381574,747,856 - 74,752,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,747,852 - 74,753,046 (-)EnsemblGRCm38mm10GRCm38
MGSCv371574,578,286 - 74,583,409 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361574,575,111 - 74,580,234 (-)NCBIMGSCv36mm8
Celera1576,252,812 - 76,257,935 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.27NCBI
Slurp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87108,516,758 - 108,520,638 (-)NCBIGRCr8
mRatBN7.27106,627,775 - 106,631,655 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7106,627,775 - 106,631,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7108,385,863 - 108,389,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07110,609,542 - 110,613,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07110,555,472 - 110,559,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07115,977,854 - 115,981,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7115,977,852 - 115,981,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07115,883,243 - 115,887,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,857,541 - 112,861,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17112,891,770 - 112,895,648 (-)NCBI
Celera7103,028,923 - 103,032,803 (-)NCBICelera
Cytogenetic Map7q34NCBI
LYNX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,208,013 - 160,214,173 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18135,727,105 - 135,741,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,483,627 - 139,490,722 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,526,505 - 142,533,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,526,506 - 142,533,707 (-)Ensemblpanpan1.1panPan2
LYNX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,450,147 - 1,455,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,450,112 - 1,455,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LYNX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,014,986 - 137,026,502 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,015,247 - 137,025,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,923,057 - 2,925,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005316110   ⟹   XP_005316167
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053031,683,795 - 1,689,172 (+)NCBI
SpeTri2.0NW_0049364709,109,888 - 9,115,271 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316167 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3273498 (Get FASTA)   NCBI Sequence Viewer  
  KAG3273499 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316167   ⟸   XM_005316110
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Lynx1 ENTREZGENE