Mmut (methylmalonyl-CoA mutase) - Rat Genome Database

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Gene: Mmut (methylmalonyl-CoA mutase) Ictidomys tridecemlineatus
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Symbol: Mmut
Name: methylmalonyl-CoA mutase
RGD ID: 12486431
Description: ENCODES a protein that exhibits cobalamin binding (inferred); GTPase activity (inferred); identical protein binding (inferred); INVOLVED IN positive regulation of GTPase activity (ortholog); post-embryonic development (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH brain disease (ortholog); inherited metabolic disorder (ortholog); methylmalonic acidemia (ortholog); FOUND IN cytoplasm (inferred); mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methylmalonyl-CoA mutase, mitochondrial; Mut
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494652,718,554 - 52,751,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647611,208,267 - 11,241,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647611,208,251 - 11,241,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mmut
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494652,718,554 - 52,751,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647611,208,267 - 11,241,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647611,208,251 - 11,241,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMUT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,430,360 - 49,463,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,430,360 - 49,463,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,398,073 - 49,430,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36649,506,950 - 49,538,990 (-)NCBINCBI36Build 36hg18NCBI36
Build 34649,506,956 - 49,538,811NCBI
Celera650,954,278 - 50,987,247 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef649,126,994 - 49,159,962 (-)NCBIHuRef
CHM1_1649,401,109 - 49,434,080 (-)NCBICHM1_1
T2T-CHM13v2.0649,272,390 - 49,305,330 (-)NCBIT2T-CHM13v2.0
Mmut
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391741,245,576 - 41,272,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1741,245,576 - 41,272,879 (+)EnsemblGRCm39 Ensembl
GRCm381740,934,685 - 40,961,990 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1740,934,685 - 40,961,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv371741,071,634 - 41,098,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361740,398,258 - 40,425,133 (+)NCBIMGSCv36mm8
Celera1744,347,903 - 44,375,209 (+)NCBICelera
Cytogenetic Map17B2NCBI
cM Map1719.55NCBI
Mmut
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,425,935 - 27,454,202 (-)NCBIGRCr8
mRatBN7.2919,928,720 - 19,956,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl919,928,727 - 19,957,046 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx928,500,013 - 28,528,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0933,574,572 - 33,602,776 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0931,883,366 - 31,911,544 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0923,323,934 - 23,352,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl923,323,936 - 23,352,668 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0922,182,975 - 22,211,162 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4916,065,495 - 16,093,956 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera917,606,384 - 17,634,555 (-)NCBICelera
Cytogenetic Map9q13NCBI
Mmut
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554118,363,142 - 8,399,216 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554118,363,142 - 8,397,839 (+)NCBIChiLan1.0ChiLan1.0
MMUT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2563,921,672 - 63,954,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1659,786,396 - 59,819,418 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,007,500 - 49,040,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,269,644 - 50,302,593 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl650,269,644 - 50,302,593 (-)Ensemblpanpan1.1panPan2
MMUT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11217,306,074 - 17,339,921 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1217,307,522 - 17,339,897 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1217,207,742 - 17,239,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01217,803,522 - 17,836,150 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1217,791,961 - 17,836,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11217,323,580 - 17,355,905 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01217,428,613 - 17,461,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01217,558,439 - 17,590,821 (-)NCBIUU_Cfam_GSD_1.0
MMUT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,597,246 - 43,624,671 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,597,313 - 43,624,603 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,107,559 - 50,128,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMUT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11722,922,262 - 22,957,742 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1722,922,307 - 22,957,879 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,420,412 - 49,455,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmut
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479914,404,662 - 14,433,632 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479914,404,873 - 14,433,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005318592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000001418   ⟹   ENSSTOP00000001272
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647611,208,267 - 11,241,648 (+)Ensembl
RefSeq Acc Id: XM_005318592   ⟹   XP_005318649
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494652,718,554 - 52,751,973 (-)NCBI
SpeTri2.0NW_00493647611,208,251 - 11,241,648 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318649 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001272.2
GenBank Protein KAG3289597 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005318649   ⟸   XM_005318592
- UniProtKB: I3LYJ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000001272   ⟸   ENSSTOT00000001418
Protein Domains
B12-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001420 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001418.3 UniProtKB/TrEMBL
Gene3D-CATH Cobalamin-binding domain UniProtKB/TrEMBL
  Methylmalonyl-CoA mutase UniProtKB/TrEMBL
InterPro Acid_CoA_mut_C UniProtKB/TrEMBL
  Cbl-dep_enz_cat UniProtKB/TrEMBL
  Cobalamin-bd UniProtKB/TrEMBL
  Cobalamin-bd_sf UniProtKB/TrEMBL
  MeMalonylCoA_mutase_a/b_cat UniProtKB/TrEMBL
  MMCoA_mutase_a_cat UniProtKB/TrEMBL
NCBI Gene Mut ENTREZGENE
PANTHER METHYLMALONYL-COA MUTASE, MITOCHONDRIAL UniProtKB/TrEMBL
  METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
Pfam B12-binding UniProtKB/TrEMBL
  MM_CoA_mutase UniProtKB/TrEMBL
PROSITE B12_BINDING UniProtKB/TrEMBL
  METMALONYL_COA_MUTASE UniProtKB/TrEMBL
Superfamily-SCOP SSF51703 UniProtKB/TrEMBL
  SSF52242 UniProtKB/TrEMBL
UniProt I3LYJ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-23 Mmut  methylmalonyl-CoA mutase  Mut    Symbol and/or name change 5135510 APPROVED