Mmut (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404946 | 52,718,554 - 52,751,973 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936476 | 11,208,267 - 11,241,648 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936476 | 11,208,251 - 11,241,648 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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MMUT (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 49,430,360 - 49,463,253 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 49,430,360 - 49,463,253 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 49,398,073 - 49,430,966 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 49,506,950 - 49,538,990 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 49,506,956 - 49,538,811 | NCBI | | | | | Celera | 6 | 50,954,278 - 50,987,247 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | p12.3 | NCBI | | | | | HuRef | 6 | 49,126,994 - 49,159,962 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 49,401,109 - 49,434,080 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 49,272,390 - 49,305,330 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Mmut (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 17 | 41,245,576 - 41,272,880 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 41,245,576 - 41,272,879 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 40,934,685 - 40,961,990 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 40,934,685 - 40,961,988 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 41,071,634 - 41,098,938 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 40,398,258 - 40,425,133 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 17 | 44,347,903 - 44,375,209 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | B2 | NCBI | | | | | cM Map | 17 | 19.55 | NCBI | | | | |
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Mmut (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 27,425,935 - 27,454,202 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 19,928,720 - 19,956,985 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 19,928,727 - 19,957,046 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 28,500,013 - 28,528,223 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 33,574,572 - 33,602,776 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 31,883,366 - 31,911,544 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 23,323,934 - 23,352,144 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 23,323,936 - 23,352,668 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 22,182,975 - 22,211,162 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 16,065,495 - 16,093,956 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 17,606,384 - 17,634,555 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q13 | NCBI | | | | |
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Mmut (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955411 | 8,363,142 - 8,399,216 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955411 | 8,363,142 - 8,397,839 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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MMUT (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 5 | 63,921,672 - 63,954,654 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 59,786,396 - 59,819,418 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 49,007,500 - 49,040,470 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 50,269,644 - 50,302,593 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 50,269,644 - 50,302,593 (-) | Ensembl | panpan1.1 | | panPan2 | |
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MMUT (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 12 | 17,306,074 - 17,339,921 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 12 | 17,307,522 - 17,339,897 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 12 | 17,207,742 - 17,239,948 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 12 | 17,803,522 - 17,836,150 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 12 | 17,791,961 - 17,836,003 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 12 | 17,323,580 - 17,355,905 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 12 | 17,428,613 - 17,461,241 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 12 | 17,558,439 - 17,590,821 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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MMUT (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 7 | 43,597,246 - 43,624,671 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 43,597,313 - 43,624,603 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 50,107,559 - 50,128,711 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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MMUT (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 17 | 22,922,262 - 22,957,742 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 22,922,307 - 22,957,879 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 49,420,412 - 49,455,585 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Mmut (Heterocephalus glaber - naked mole-rat) |
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