Tacc1 (transforming acidic coiled-coil containing protein 1) - Rat Genome Database

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Gene: Tacc1 (transforming acidic coiled-coil containing protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Tacc1
Name: transforming acidic coiled-coil containing protein 1
RGD ID: 12486123
Description: ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); nuclear glucocorticoid receptor binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cerebral cortex development (ortholog); interkinetic nuclear migration (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 54 (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transforming acidic coiled-coil containing protein 1, transcript variant X1; transforming acidic coiled-coil containing protein 1, transcript variant X10; transforming acidic coiled-coil containing protein 1, transcript variant X11; transforming acidic coiled-coil containing protein 1, transcript variant X2; transforming acidic coiled-coil containing protein 1, transcript variant X3; transforming acidic coiled-coil containing protein 1, transcript variant X4; transforming acidic coiled-coil containing protein 1, transcript variant X5; transforming acidic coiled-coil containing protein 1, transcript variant X6; transforming acidic coiled-coil containing protein 1, transcript variant X7; transforming acidic coiled-coil containing protein 1, transcript variant X8; transforming acidic coiled-coil containing protein 1, transcript variant X9; transforming acidic coiled-coil-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,303,964 - 49,391,262 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367102,042,671 - 2,157,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tacc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,303,964 - 49,391,262 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367102,042,671 - 2,157,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38838,728,582 - 38,853,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl838,728,186 - 38,853,028 (+)EnsemblGRCh38hg38GRCh38
GRCh37838,586,100 - 38,710,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36838,763,938 - 38,829,703 (+)NCBINCBI36Build 36hg18NCBI36
Build 34838,763,937 - 38,829,702NCBI
Celera837,539,007 - 37,663,880 (+)NCBICelera
Cytogenetic Map8p11.22NCBI
HuRef837,121,058 - 37,245,998 (+)NCBIHuRef
CHM1_1838,787,711 - 38,912,550 (+)NCBICHM1_1
T2T-CHM13v2.0839,005,551 - 39,130,036 (+)NCBIT2T-CHM13v2.0
Tacc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39825,644,568 - 25,730,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl825,644,568 - 25,746,604 (-)EnsemblGRCm39 Ensembl
GRCm38825,154,552 - 25,256,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,154,552 - 25,256,588 (-)EnsemblGRCm38mm10GRCm38
MGSCv37826,265,024 - 26,311,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36826,620,097 - 26,666,994 (-)NCBIMGSCv36mm8
Celera826,621,682 - 26,668,549 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map813.7NCBI
Tacc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,515,016 - 73,598,395 (+)NCBIGRCr8
mRatBN7.21666,812,232 - 66,895,736 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,812,295 - 66,895,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,122,245 - 72,172,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01675,528,196 - 75,578,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,776,526 - 70,827,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01671,596,970 - 71,681,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,629,525 - 71,681,126 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01671,252,762 - 71,335,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41671,241,785 - 71,304,959 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11671,242,049 - 71,305,224 (+)NCBI
Celera1664,752,412 - 64,802,875 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
Tacc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546314,344,010 - 14,405,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546314,314,201 - 14,409,848 (+)NCBIChiLan1.0ChiLan1.0
TACC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2757,290,547 - 57,415,122 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1833,007,787 - 33,132,605 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0838,029,394 - 38,154,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1835,205,047 - 35,329,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl835,219,219 - 35,329,134 (+)Ensemblpanpan1.1panPan2
TACC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11626,677,717 - 26,797,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1626,682,327 - 26,797,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1627,198,235 - 27,317,459 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01628,508,867 - 28,628,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1628,513,461 - 28,627,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11626,802,061 - 26,891,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01627,379,067 - 27,498,300 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01627,417,631 - 27,537,073 (-)NCBIUU_Cfam_GSD_1.0
TACC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11547,749,079 - 47,861,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21554,862,923 - 54,911,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TACC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1836,752,966 - 36,871,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl836,774,647 - 36,866,586 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660525,108,644 - 5,235,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247804,771,789 - 4,847,317 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247804,769,270 - 4,886,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338397   ⟹   XP_005338454
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,314 (-)NCBI
SpeTri2.0NW_0049367102,095,903 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013364275   ⟹   XP_013219729
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,391,261 (-)NCBI
SpeTri2.0NW_0049367102,069,975 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735307   ⟹   XP_021590982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,315 (-)NCBI
SpeTri2.0NW_0049367102,095,903 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735308   ⟹   XP_021590983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,315 (-)NCBI
SpeTri2.0NW_0049367102,095,903 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735309   ⟹   XP_021590984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,391,262 (-)NCBI
SpeTri2.0NW_0049367102,069,993 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735310   ⟹   XP_021590985
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,315 (-)NCBI
SpeTri2.0NW_0049367102,095,903 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735311   ⟹   XP_021590986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,391,260 (-)NCBI
SpeTri2.0NW_0049367102,069,975 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735313   ⟹   XP_021590988
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,391,251 (-)NCBI
SpeTri2.0NW_0049367102,069,979 - 2,157,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268666   ⟹   XP_040124600
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,314 (-)NCBI
RefSeq Acc Id: XM_040268669   ⟹   XP_040124603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494349,303,964 - 49,365,313 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013219729   ⟸   XM_013364275
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005338454   ⟸   XM_005338397
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021590986   ⟸   XM_021735311
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021590988   ⟸   XM_021735313
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_021590984   ⟸   XM_021735309
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021590982   ⟸   XM_021735307
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021590985   ⟸   XM_021735310
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021590983   ⟸   XM_021735308
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040124600   ⟸   XM_040268666
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040124603   ⟸   XM_040268669
- Peptide Label: isoform X9
- UniProtKB: I3MNZ8 (UniProtKB/TrEMBL)
Protein Domains
Transforming acidic coiled-coil-containing protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015010 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015010.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro TACC UniProtKB/TrEMBL
  TACC_C UniProtKB/TrEMBL
NCBI Gene Tacc1 ENTREZGENE
PANTHER PTHR13924 UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam TACC_C UniProtKB/TrEMBL
UniProt I3MNZ8 ENTREZGENE, UniProtKB/TrEMBL