B4galt5 (beta-1,4-galactosyltransferase 5) - Rat Genome Database

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Gene: B4galt5 (beta-1,4-galactosyltransferase 5) Ictidomys tridecemlineatus
Analyze
Symbol: B4galt5
Name: beta-1,4-galactosyltransferase 5
RGD ID: 12485444
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); N-acetyllactosamine synthase activity (inferred); INVOLVED IN glycosylation (ortholog); poly-N-acetyllactosamine biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,632,945 - 49,713,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2049,632,945 - 49,713,878 (-)EnsemblGRCh38hg38GRCh38
GRCh372048,249,482 - 48,330,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,682,889 - 47,763,745 (-)NCBINCBI36hg18NCBI36
Build 342047,682,888 - 47,763,745NCBI
Celera2044,954,098 - 45,035,021 (-)NCBI
Cytogenetic Map20q13.13NCBI
HuRef2044,998,184 - 45,021,953 (-)NCBIHuRef
CHM1_12048,154,191 - 48,235,100 (-)NCBICHM1_1
T2T-CHM13v2.02051,402,498 - 51,483,440 (-)NCBI
B4galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,140,364 - 167,191,155 (-)NCBIGRCm39mm39
GRCm39 Ensembl2167,140,364 - 167,191,103 (-)Ensembl
GRCm382167,298,444 - 167,349,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,298,444 - 167,349,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,123,944 - 167,174,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv362166,992,266 - 167,040,388 (-)NCBImm8
Celera2173,239,050 - 173,289,822 (-)NCBICelera
Cytogenetic Map2H3NCBI
B4galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23156,018,056 - 156,033,983 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)Ensembl
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Celera3154,599,548 - 154,615,476 (-)NCBICelera
Cytogenetic Map3q42NCBI
B4galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12047,042,479 - 47,123,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,220,973 - 36,241,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,221,189 - 36,300,804 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,462,952 - 35,538,860 (-)NCBI
ROS_Cfam_1.02436,925,343 - 37,001,298 (-)NCBI
ROS_Cfam_1.0 Ensembl2436,925,564 - 37,001,902 (-)Ensembl
UMICH_Zoey_3.12436,166,534 - 36,242,395 (-)NCBI
UNSW_CanFamBas_1.02436,303,207 - 36,376,262 (-)NCBI
UU_Cfam_GSD_1.02436,842,820 - 36,918,775 (-)NCBI
B4GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,813 - 51,334,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,270,945 - 14,357,052 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl214,271,141 - 14,354,159 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605062,756,661 - 62,840,309 (+)NCBIVero_WHO_p1.0
B4galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247905,766,903 - 5,789,140 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247905,770,586 - 5,792,036 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013358664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013358664   ⟹   XP_013214118
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013214118 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3263456 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013214118   ⟸   XM_013358664
- Sequence:
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003851 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000003455.3 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003853.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt5 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3M349_ICTTR UniProtKB/TrEMBL