Ankdd1a (ankyrin repeat and death domain containing 1A) - Rat Genome Database

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Gene: Ankdd1a (ankyrin repeat and death domain containing 1A) Ictidomys tridecemlineatus
Analyze
Symbol: Ankdd1a
Name: ankyrin repeat and death domain containing 1A
RGD ID: 12483921
Description: INVOLVED IN protein localization to ciliary inversin compartment (inferred); signal transduction (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN ciliary inversin compartment (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and death domain-containing protein 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,370,899 - 107,434,369 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647125,258,553 - 25,281,997 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647125,254,021 - 25,282,486 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ankdd1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,370,899 - 107,434,369 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647125,258,553 - 25,281,997 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647125,254,021 - 25,282,486 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKDD1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381564,911,902 - 64,958,691 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1564,911,902 - 64,958,691 (+)EnsemblGRCh38hg38GRCh38
GRCh371565,204,101 - 65,251,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361562,991,154 - 63,038,095 (+)NCBINCBI36Build 36hg18NCBI36
Celera1542,082,165 - 42,129,108 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,029,154 - 42,076,097 (+)NCBIHuRef
CHM1_11565,323,970 - 65,370,901 (+)NCBICHM1_1
T2T-CHM13v2.01562,721,187 - 62,768,111 (+)NCBIT2T-CHM13v2.0
Ankdd1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,395,746 - 65,427,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,395,752 - 65,427,475 (-)EnsemblGRCm39 Ensembl
GRCm38965,488,464 - 65,520,412 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,488,470 - 65,520,193 (-)EnsemblGRCm38mm10GRCm38
MGSCv37965,349,791 - 65,368,000 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36965,288,975 - 65,300,661 (-)NCBIMGSCv36mm8
Celera962,717,857 - 62,759,871 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map935.35NCBI
Ankdd1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,912,707 - 74,938,870 (-)NCBIGRCr8
mRatBN7.2866,017,571 - 66,043,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl866,017,773 - 66,042,651 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0871,034,630 - 71,057,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,035,309 - 71,055,969 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0870,721,496 - 70,742,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera865,417,165 - 65,440,026 (-)NCBICelera
Cytogenetic Map8q24NCBI
Ankdd1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,630,868 - 10,648,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,630,303 - 10,651,918 (-)NCBIChiLan1.0ChiLan1.0
ANKDD1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21654,158,123 - 54,204,946 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11558,329,516 - 58,376,503 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01543,851,575 - 43,898,578 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11562,137,207 - 62,183,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1562,137,207 - 62,181,984 (+)Ensemblpanpan1.1panPan2
ANKDD1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13029,309,167 - 29,366,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3029,309,093 - 29,353,793 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3029,236,280 - 29,283,627 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,495,832 - 29,542,865 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,500,585 - 29,542,861 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,428,578 - 29,475,305 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,490,040 - 29,537,290 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03029,730,592 - 29,775,614 (+)NCBIUU_Cfam_GSD_1.0
ANKDD1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1107,094,123 - 107,135,517 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11107,095,472 - 107,185,484 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21117,807,793 - 117,851,659 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKDD1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12618,631,658 - 18,672,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2618,629,575 - 18,667,567 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048122,760,738 - 122,802,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankdd1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247817,740,232 - 7,760,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247817,721,539 - 7,763,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000010092   ⟹   ENSSTOP00000009053
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647125,258,553 - 25,281,997 (+)Ensembl
RefSeq Acc Id: XM_040274439   ⟹   XP_040130373
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,370,899 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274440   ⟹   XP_040130374
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,404,763 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274441   ⟹   XP_040130375
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,406,019 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274442   ⟹   XP_040130376
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,396,378 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274443   ⟹   XP_040130377
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,406,019 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274444   ⟹   XP_040130378
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,404,764 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274445   ⟹   XP_040130379
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,406,019 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274446   ⟹   XP_040130380
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,396,379 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274447   ⟹   XP_040130381
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,408,733 - 107,434,369 (+)NCBI
RefSeq Acc Id: XM_040274448   ⟹   XP_040130382
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,406,019 - 107,434,369 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040130373   ⟸   XM_040274439
- Peptide Label: isoform X1
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130376   ⟸   XM_040274442
- Peptide Label: isoform X4
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130380   ⟸   XM_040274446
- Peptide Label: isoform X8
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130374   ⟸   XM_040274440
- Peptide Label: isoform X2
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130378   ⟸   XM_040274444
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040130375   ⟸   XM_040274441
- Peptide Label: isoform X3
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130379   ⟸   XM_040274445
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040130377   ⟸   XM_040274443
- Peptide Label: isoform X5
- UniProtKB: I3MET5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130382   ⟸   XM_040274448
- Peptide Label: isoform X9
RefSeq Acc Id: XP_040130381   ⟸   XM_040274447
- Peptide Label: isoform X9
RefSeq Acc Id: ENSSTOP00000009053   ⟸   ENSSTOT00000010092
Protein Domains
Death


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010088 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010092.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
NCBI Gene Ankdd1a ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  MOLTING PROTEIN MLT-4 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  DEATH_DOMAIN UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt I3MET5 ENTREZGENE, UniProtKB/TrEMBL