Mbnl3 (muscleblind like splicing regulator 3) - Rat Genome Database

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Gene: Mbnl3 (muscleblind like splicing regulator 3) Ictidomys tridecemlineatus
Analyze
Symbol: Mbnl3
Name: muscleblind like splicing regulator 3
RGD ID: 12483791
Description: ENCODES a protein that exhibits metal ion binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of myoblast differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: muscleblind like splicing regulator 3, transcript variant X1; muscleblind like splicing regulator 3, transcript variant X2; muscleblind-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X101,424,765 - 101,541,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366912,460,717 - 2,526,437 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366912,460,409 - 2,526,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Mbnl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X101,424,765 - 101,541,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366912,460,717 - 2,526,437 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366912,460,409 - 2,526,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBNL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X132,369,320 - 132,490,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX132,369,320 - 132,489,968 (-)EnsemblGRCh38hg38GRCh38
GRCh37X131,503,348 - 131,624,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X131,339,858 - 131,401,399 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX131,889,747 - 132,010,400 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX120,905,795 - 121,027,169 (-)NCBIHuRef
CHM1_1X131,414,910 - 131,535,546 (-)NCBICHM1_1
T2T-CHM13v2.0X130,693,540 - 130,814,705 (-)NCBIT2T-CHM13v2.0
Mbnl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X50,202,371 - 50,294,867 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX50,206,146 - 50,295,409 (-)EnsemblGRCm39 Ensembl
GRCm38X51,113,494 - 51,205,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX51,117,269 - 51,206,532 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X48,466,671 - 48,559,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X47,358,121 - 47,450,459 (-)NCBIMGSCv36mm8
CeleraX38,533,098 - 38,627,627 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX28.03NCBI
Mbnl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X135,526,256 - 135,621,499 (-)NCBIGRCr8
mRatBN7.2X130,641,942 - 130,737,179 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX130,648,538 - 130,737,056 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX132,768,378 - 132,818,867 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X136,350,293 - 136,400,778 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X133,927,825 - 133,978,302 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X138,378,674 - 138,473,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX138,384,912 - 138,435,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X138,432,133 - 138,526,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X137,891,633 - 137,941,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX129,559,433 - 129,609,914 (-)NCBICelera
Cytogenetic MapXq36NCBI
Mbnl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554732,490,011 - 2,547,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554732,449,543 - 2,555,445 (+)NCBIChiLan1.0ChiLan1.0
MBNL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X131,794,468 - 131,915,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X131,800,748 - 131,918,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X121,503,423 - 121,621,124 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X131,808,495 - 131,879,019 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX131,816,266 - 131,879,035 (-)Ensemblpanpan1.1panPan2
MBNL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X103,257,410 - 103,370,903 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX103,264,542 - 103,327,481 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX89,430,395 - 89,543,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X105,117,479 - 105,230,994 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX105,124,613 - 105,187,563 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X102,528,383 - 102,641,864 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X104,403,921 - 104,517,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X104,175,327 - 104,289,684 (-)NCBIUU_Cfam_GSD_1.0
MBNL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX108,494,939 - 108,612,875 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X108,488,224 - 108,612,896 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X124,481,415 - 124,648,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MBNL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X107,516,673 - 107,634,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX107,525,991 - 107,585,065 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606544,984,685 - 45,106,439 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mbnl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479712,047,325 - 12,150,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479712,039,406 - 12,151,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000006715   ⟹   ENSSTOP00000006007
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366912,460,948 - 2,524,745 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036020   ⟹   ENSSTOP00000028890
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366912,460,898 - 2,525,119 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039725   ⟹   ENSSTOP00000028338
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366912,460,717 - 2,526,437 (+)Ensembl
RefSeq Acc Id: XM_021734817   ⟹   XP_021590492
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,424,765 - 101,540,251 (-)NCBI
SpeTri2.0NW_0049366912,495,287 - 2,526,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734818   ⟹   XP_021590493
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,540,251 (-)NCBI
SpeTri2.0NW_0049366912,460,409 - 2,525,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285608   ⟹   XP_040141542
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285614   ⟹   XP_040141548
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,541,168 (-)NCBI
RefSeq Acc Id: XM_040285616   ⟹   XP_040141550
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,424,765 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285620   ⟹   XP_040141554
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285631   ⟹   XP_040141565
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,424,765 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285633   ⟹   XP_040141567
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285641   ⟹   XP_040141575
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,424,765 - 101,540,251 (-)NCBI
RefSeq Acc Id: XM_040285645   ⟹   XP_040141579
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X101,432,537 - 101,540,251 (-)NCBI
RefSeq Acc Id: XP_021590493   ⟸   XM_021734818
- Peptide Label: isoform X4
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590492   ⟸   XM_021734817
- Peptide Label: isoform X8
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141575   ⟸   XM_040285641
- Peptide Label: isoform X7
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141550   ⟸   XM_040285616
- Peptide Label: isoform X2
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141565   ⟸   XM_040285631
- Peptide Label: isoform X5
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141548   ⟸   XM_040285614
- Peptide Label: isoform X1
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141579   ⟸   XM_040285645
- Peptide Label: isoform X9
RefSeq Acc Id: XP_040141567   ⟸   XM_040285633
- Peptide Label: isoform X6
- UniProtKB: A0A287D457 (UniProtKB/TrEMBL),   I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141554   ⟸   XM_040285620
- Peptide Label: isoform X3
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141542   ⟸   XM_040285608
- Peptide Label: isoform X1
- UniProtKB: I3M8E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000006007   ⟸   ENSSTOT00000006715
RefSeq Acc Id: ENSSTOP00000028338   ⟸   ENSSTOT00000039725
RefSeq Acc Id: ENSSTOP00000028890   ⟸   ENSSTOT00000036020
Protein Domains
C3H1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006715 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006715.3 UniProtKB/TrEMBL
  ENSSTOT00000036020.1 UniProtKB/TrEMBL
  ENSSTOT00000039725.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.210 UniProtKB/TrEMBL
InterPro Znf-CCCH_4 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
NCBI Gene Mbnl3 ENTREZGENE
PANTHER MUSCLEBLIND-LIKE PROTEIN UniProtKB/TrEMBL
  MUSCLEBLIND-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam zf-CCCH_2 UniProtKB/TrEMBL
  zf-CCCH_4 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
UniProt A0A287D457 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5U0_ICTTR UniProtKB/TrEMBL
  I3M8E5 ENTREZGENE, UniProtKB/TrEMBL