Entpd4 (ectonucleoside triphosphate diphosphohydrolase 4) - Rat Genome Database

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Gene: Entpd4 (ectonucleoside triphosphate diphosphohydrolase 4) Ictidomys tridecemlineatus
Analyze
Symbol: Entpd4
Name: ectonucleoside triphosphate diphosphohydrolase 4
RGD ID: 12482635
Description: ENCODES a protein that exhibits ATP binding (inferred); CDP phosphatase activity (inferred); CTPase activity (inferred); INVOLVED IN CTP metabolic process (inferred); GDP catabolic process (inferred); nucleobase-containing small molecule catabolic process (inferred); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); FOUND IN obsolete integral component of autophagosome membrane (ortholog); obsolete integral component of Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494311,650,183 - 11,673,850 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,893,393 - 6,919,584 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365556,896,661 - 6,920,333 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Entpd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494311,650,183 - 11,673,850 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,893,393 - 6,919,584 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365556,896,661 - 6,920,333 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ENTPD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38823,429,162 - 23,457,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl823,385,783 - 23,457,695 (-)EnsemblGRCh38hg38GRCh38
GRCh37823,286,675 - 23,315,160 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36823,346,075 - 23,376,624 (-)NCBINCBI36Build 36hg18NCBI36
Build 34823,346,095 - 23,371,081NCBI
Celera822,252,129 - 22,277,803 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,832,046 - 21,852,898 (-)NCBIHuRef
CHM1_1823,488,792 - 23,517,371 (-)NCBICHM1_1
T2T-CHM13v2.0823,704,046 - 23,732,531 (-)NCBIT2T-CHM13v2.0
Entpd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,574,600 - 69,604,191 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,574,623 - 69,604,719 (+)EnsemblGRCm39 Ensembl
GRCm381469,337,151 - 69,366,742 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,337,174 - 69,367,270 (+)EnsemblGRCm38mm10GRCm38
MGSCv371469,955,208 - 69,984,799 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,290,515 - 68,320,017 (+)NCBIMGSCv36mm8
Celera1467,110,551 - 67,140,190 (+)NCBICelera
Cytogenetic Map14D2NCBI
Entpd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21544,630,873 - 44,658,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,630,873 - 44,658,706 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1548,748,781 - 48,776,557 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01549,860,278 - 49,888,054 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01546,719,607 - 46,747,383 (+)NCBIRnor_WKY
Rnor_6.01551,222,954 - 51,250,787 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,222,954 - 51,250,787 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01554,952,393 - 54,980,226 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41549,928,874 - 49,956,707 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11549,954,416 - 49,971,502 (+)NCBI
Celera1544,313,639 - 44,341,471 (+)NCBICelera
Cytogenetic Map15p11NCBI
Entpd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,609,211 - 46,637,643 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,609,211 - 46,637,622 (-)NCBIChiLan1.0ChiLan1.0
ENTPD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1819,614,384 - 19,635,250 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,571,337 - 19,635,150 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0822,678,746 - 22,707,408 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ENTPD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,032,104 - 34,067,772 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,032,055 - 34,063,281 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2534,620,798 - 34,656,442 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02534,239,828 - 34,275,466 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2534,239,830 - 34,321,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12534,186,191 - 34,221,827 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,040,507 - 34,076,213 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02534,195,642 - 34,231,581 (+)NCBIUU_Cfam_GSD_1.0
ENTPD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl147,565,604 - 7,594,057 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1147,565,610 - 7,604,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,429,640 - 8,457,467 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ENTPD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1821,528,520 - 21,574,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl821,543,888 - 21,574,311 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605220,646,740 - 20,692,640 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Entpd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475818,670,041 - 18,697,619 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475818,670,609 - 18,697,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015902   ⟹   ENSSTOP00000014233
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365556,896,704 - 6,919,584 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030612   ⟹   ENSSTOP00000029617
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365556,893,393 - 6,919,584 (-)Ensembl
RefSeq Acc Id: XM_005329324   ⟹   XP_005329381
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494311,650,184 - 11,673,850 (+)NCBI
SpeTri2.0NW_0049365556,896,661 - 6,920,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005329325   ⟹   XP_005329382
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494311,650,183 - 11,673,850 (+)NCBI
SpeTri2.0NW_0049365556,896,661 - 6,920,333 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329381 (Get FASTA)   NCBI Sequence Viewer  
  XP_005329382 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005329382   ⟸   XM_005329325
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005329381   ⟸   XM_005329324
- Peptide Label: isoform X1
- UniProtKB: I3MQJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014233   ⟸   ENSSTOT00000015902
RefSeq Acc Id: ENSSTOP00000029617   ⟸   ENSSTOT00000030612


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014233 ENTREZGENE
  ENSSTOP00000014233.3 UniProtKB/TrEMBL
  ENSSTOP00000029617.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015902.3 UniProtKB/TrEMBL
  ENSSTOT00000030612.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
  Exopolyphosphatase. Domain 2 UniProtKB/TrEMBL
InterPro GDA1_CD39_NTPase UniProtKB/TrEMBL
NCBI Gene Entpd4 ENTREZGENE
PANTHER ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 4 UniProtKB/TrEMBL
  PTHR11782 UniProtKB/TrEMBL
Pfam GDA1_CD39 UniProtKB/TrEMBL
PROSITE GDA1_CD39_NTPASE UniProtKB/TrEMBL
UniProt A0A287D7R6_ICTTR UniProtKB/TrEMBL
  I3MQJ9 ENTREZGENE, UniProtKB/TrEMBL