Smim13 (small integral membrane protein 13) - Rat Genome Database

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Gene: Smim13 (small integral membrane protein 13) Ictidomys tridecemlineatus
Analyze
Symbol: Smim13
Name: small integral membrane protein 13
RGD ID: 12482324
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,632,561 - 13,642,249 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365341,901,959 - 1,911,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Smim13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,632,561 - 13,642,249 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365341,901,959 - 1,911,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38611,093,834 - 11,138,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl611,093,834 - 11,138,733 (+)EnsemblGRCh38hg38GRCh38
GRCh37611,094,067 - 11,138,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36611,242,617 - 11,246,957 (+)NCBINCBI36Build 36hg18NCBI36
Celera612,322,733 - 12,367,437 (+)NCBICelera
Cytogenetic Map6p24.2NCBI
HuRef611,025,782 - 11,070,397 (+)NCBIHuRef
CHM1_1611,096,365 - 11,141,415 (+)NCBICHM1_1
T2T-CHM13v2.0610,961,754 - 11,006,653 (+)NCBIT2T-CHM13v2.0
Smim13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,403,320 - 41,430,053 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,403,320 - 41,430,053 (+)EnsemblGRCm39 Ensembl
GRCm381341,249,844 - 41,276,577 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,249,844 - 41,276,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv371341,345,213 - 41,371,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,345,213 - 41,371,946 (+)NCBIMGSCv36mm8
Celera1342,331,977 - 42,358,679 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.41NCBI
Smim13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81723,703,414 - 23,721,457 (-)NCBIGRCr8
mRatBN7.21723,497,662 - 23,515,705 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1723,366,759 - 23,384,816 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01724,970,448 - 24,988,505 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,307,712 - 23,325,771 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,334,989 - 21,353,252 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,339,059 - 21,353,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,323,000 - 23,337,383 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,430,963 - 29,445,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1723,169,508 - 23,187,549 (-)NCBICelera
Cytogenetic Map17p12NCBI
Smim13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554653,321,886 - 3,343,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554653,321,886 - 3,343,467 (-)NCBIChiLan1.0ChiLan1.0
SMIM13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,741,001 - 25,785,445 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,730,474 - 21,775,474 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,932,158 - 10,976,874 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1611,208,331 - 11,252,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl611,208,331 - 11,252,269 (+)Ensemblpanpan1.1panPan2
SMIM13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,783,392 - 10,811,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,732,363 - 10,760,956 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,885,428 - 10,909,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,885,462 - 10,910,365 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,716,109 - 10,744,704 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,764,472 - 10,793,092 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03512,086,122 - 12,114,646 (+)NCBIUU_Cfam_GSD_1.0
SMIM13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,774,542 - 7,779,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,774,547 - 7,784,038 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.278,172,176 - 8,177,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,007,013 - 61,049,871 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,011,107 - 61,049,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604411,125,782 - 11,169,049 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475614,883,126 - 14,902,371 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_040283665   ⟹   XP_040139599
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494613,632,561 - 13,642,249 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040139599 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3288687 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040139599   ⟸   XM_040283665


Additional Information

Database Acc Id Source(s)
NCBI Gene Smim13 ENTREZGENE