Gene: Smim13 (small integral membrane protein 13) Ictidomys tridecemlineatus |
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Analyze |
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Symbol: |
Smim13 |
Name: |
small integral membrane protein 13 |
RGD ID: |
12482324 |
Description: |
ASSOCIATED WITH genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
Smim13 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SMIM13 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 11,093,834 - 11,138,733 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 11,093,834 - 11,138,733 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 11,094,067 - 11,138,966 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 11,242,617 - 11,246,957 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 6 | 12,322,733 - 12,367,437 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | p24.2 | NCBI | | | | | HuRef | 6 | 11,025,782 - 11,070,397 (+) | NCBI | | HuRef | | | CHM1_1 | 6 | 11,096,365 - 11,141,415 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 10,961,754 - 11,006,653 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Smim13 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 41,403,320 - 41,430,053 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 41,403,320 - 41,430,053 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 41,249,844 - 41,276,577 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 41,249,844 - 41,276,577 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 41,345,213 - 41,371,946 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 41,345,213 - 41,371,946 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 42,331,977 - 42,358,679 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | A3.3 | NCBI | | | | | cM Map | 13 | 20.41 | NCBI | | | | |
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Smim13 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 17 | 23,703,414 - 23,721,457 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 23,497,662 - 23,515,705 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | UTH_Rnor_SHR_Utx | 17 | 23,366,759 - 23,384,816 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 24,970,448 - 24,988,505 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 23,307,712 - 23,325,771 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 21,334,989 - 21,353,252 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 21,339,059 - 21,353,134 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 23,323,000 - 23,337,383 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 29,430,963 - 29,445,347 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 17 | 23,169,508 - 23,187,549 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | p12 | NCBI | | | | |
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Smim13 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955465 | 3,321,886 - 3,343,467 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955465 | 3,321,886 - 3,343,467 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SMIM13 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 5 | 25,741,001 - 25,785,445 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 21,730,474 - 21,775,474 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 10,932,158 - 10,976,874 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 11,208,331 - 11,252,281 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 11,208,331 - 11,252,269 (+) | Ensembl | panpan1.1 | | panPan2 | |
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SMIM13 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 35 | 10,783,392 - 10,811,914 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 35 | 10,732,363 - 10,760,956 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 35 | 10,885,428 - 10,909,960 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 35 | 10,885,462 - 10,910,365 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 35 | 10,716,109 - 10,744,704 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 35 | 10,764,472 - 10,793,092 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 35 | 12,086,122 - 12,114,646 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SMIM13 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 7 | 7,774,542 - 7,779,936 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 7,774,547 - 7,784,038 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 8,172,176 - 8,177,543 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SMIM13 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 17 | 61,007,013 - 61,049,871 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 61,011,107 - 61,049,381 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 11,125,782 - 11,169,049 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Smim13 (Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
RefSeq Acc Id: |
XM_040283665 ⟹ XP_040139599 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404946 | 13,632,561 - 13,642,249 (-) | NCBI |
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RefSeq Acc Id: |
XP_040139599 ⟸ XM_040283665 |
Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
NCBI Gene |
Smim13 |
ENTREZGENE |
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