Wipf3 (WAS/WASL interacting protein family member 3) - Rat Genome Database

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Gene: Wipf3 (WAS/WASL interacting protein family member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Wipf3
Name: WAS/WASL interacting protein family member 3
RGD ID: 12481565
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAS/WASL-interacting protein family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511886,974,695 - 86,997,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364786,186,483 - 6,206,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364786,186,405 - 6,208,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
synapse  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wipf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511886,974,695 - 86,997,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364786,186,483 - 6,206,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364786,186,405 - 6,208,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38729,806,508 - 29,917,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl729,806,486 - 29,917,061 (+)EnsemblGRCh38hg38GRCh38
GRCh37729,846,124 - 29,956,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36729,840,866 - 29,912,316 (+)NCBINCBI36Build 36hg18NCBI36
Celera729,904,882 - 29,935,185 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef729,727,686 - 29,838,366 (+)NCBIHuRef
CHM1_1729,846,374 - 29,956,782 (+)NCBICHM1_1
T2T-CHM13v2.0729,944,291 - 30,054,757 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2729,896,075 - 30,006,505 (+)NCBI
Wipf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39654,406,206 - 54,480,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl654,406,588 - 54,480,753 (+)EnsemblGRCm39 Ensembl
GRCm38654,429,218 - 54,503,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl654,429,603 - 54,503,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37654,402,877 - 54,453,762 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36654,411,061 - 54,418,818 (+)NCBIMGSCv36mm8
Celera654,981,884 - 55,032,697 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map626.93NCBI
Wipf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8484,880,403 - 84,960,250 (+)NCBIGRCr8
mRatBN7.2483,550,075 - 83,629,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl483,550,468 - 83,629,386 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx488,771,521 - 88,844,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0484,546,946 - 84,619,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0482,966,400 - 83,039,721 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0484,596,305 - 84,676,775 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl484,597,323 - 84,676,775 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04149,256,226 - 149,336,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4482,823,009 - 82,907,420 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1483,107,630 - 83,192,042 (+)NCBI
Celera478,419,412 - 78,498,878 (+)NCBICelera
Cytogenetic Map4q24NCBI
Wipf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541031,166,953 - 31,226,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541031,166,874 - 31,227,377 (+)NCBIChiLan1.0ChiLan1.0
WIPF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2634,623,578 - 34,735,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1782,948,306 - 83,060,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0730,436,514 - 30,547,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1730,583,574 - 30,661,986 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl730,582,399 - 30,661,986 (+)Ensemblpanpan1.1panPan2
WIPF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11442,634,342 - 42,717,974 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1442,692,136 - 42,715,726 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1442,067,530 - 42,151,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01442,578,935 - 42,659,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1442,595,211 - 42,658,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11442,692,895 - 42,776,491 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01442,370,765 - 42,454,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01442,732,112 - 42,812,849 (+)NCBIUU_Cfam_GSD_1.0
WIPF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1842,991,498 - 43,071,266 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11842,991,495 - 43,025,177 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21847,383,131 - 47,436,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WIPF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12128,459,605 - 28,570,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2128,471,971 - 28,501,063 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604276,157,604 - 76,225,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wipf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624739872,213 - 944,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624739843,193 - 971,646 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000009010   ⟹   ENSSTOP00000008073
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364786,186,483 - 6,206,957 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000040634   ⟹   ENSSTOP00000025748
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364786,186,483 - 6,206,957 (+)Ensembl
RefSeq Acc Id: XM_021722255   ⟹   XP_021577930
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511886,974,695 - 86,997,226 (+)NCBI
SpeTri2.0NW_0049364786,186,405 - 6,208,588 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021577930 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008073.3
  ENSSTOP00000025748.1
GenBank Protein KAG3278067 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021577930   ⟸   XM_021722255
- UniProtKB: I3MCR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000025748   ⟸   ENSSTOT00000040634
RefSeq Acc Id: ENSSTOP00000008073   ⟸   ENSSTOT00000009010
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009012 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009010.3 UniProtKB/TrEMBL
  ENSSTOT00000040634.1 UniProtKB/TrEMBL
InterPro WH2_dom UniProtKB/TrEMBL
NCBI Gene Wipf3 ENTREZGENE
Pfam WH2 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
SMART WH2 UniProtKB/TrEMBL
UniProt A0A287CWU8_ICTTR UniProtKB/TrEMBL
  I3MCR6 ENTREZGENE, UniProtKB/TrEMBL