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Gene: Ncaph2 (non-SMC condensin II complex subunit H2) Ictidomys tridecemlineatus

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Symbol:

Ncaph2

Name:

non-SMC condensin II complex subunit H2

RGD ID:

12481105

Description:

ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN chromosome condensation (inferred); female meiosis chromosome separation (inferred); female meiotic nuclear division (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN cell junction (inferred); chromosome (inferred); condensed chromosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

condensin-2 complex subunit H2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	320,877 - 332,110 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	321,011 - 327,607 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	320,885 - 327,290 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 22q13 duplication syndrome (ISO)

congenital disorder of glycosylation Ig (ISO)

COX deficiency, infantile mitochondrial myopathy (ISO)

cytochrome-c oxidase deficiency disease (ISO)

dilated cardiomyopathy (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

megaconial type congenital muscular dystrophy (ISO)

metachromatic leukodystrophy (ISO)

mitochondrial complex IV deficiency nuclear type 1 (ISO)

mitochondrial complex IV deficiency nuclear type 2 (ISO)

mitochondrial DNA depletion syndrome 1 (ISO)

mitochondrial DNA depletion syndrome 8A (ISO)

Mitochondrial DNA Depletion Syndrome, MNGIE Type (ISO)

Myopia 6 (ISO)

Phelan-McDermid syndrome (ISO)

visual epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome condensation (IEA)

female meiosis chromosome separation (IEA)

female meiotic nuclear division (IEA)

meiotic chromosome condensation (IEA)

mitotic chromosome condensation (IEA)

mitotic sister chromatid separation (IEA)

positive regulation of chromosome segregation (IEA)

positive regulation of chromosome separation (IEA)

T cell differentiation in thymus (IEA)

Cellular Component

cell junction (IEA)

chromosome (IEA)

condensed chromosome (IEA)

condensed nuclear chromosome (IEA)

condensin complex (IEA)

intercellular bridge (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ncaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	320,877 - 332,110 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	321,011 - 327,607 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	320,885 - 327,290 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCAPH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	50,508,224 - 50,524,780 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	50,508,224 - 50,524,780 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	50,946,653 - 50,963,209 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	49,293,511 - 49,308,782 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	34,822,672 - 34,839,236 (+)	NCBI		Celera
Cytogenetic Map	22	q13.33	NCBI
HuRef	22	33,837,777 - 33,854,227 (+)	NCBI		HuRef
CHM1_1	22	50,905,383 - 50,921,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	51,018,752 - 51,035,345 (+)	NCBI		T2T-CHM13v2.0

Ncaph2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	89,239,920 - 89,257,030 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	89,239,922 - 89,257,029 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	89,355,719 - 89,372,850 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	89,355,719 - 89,372,826 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	89,186,153 - 89,203,259 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	89,183,539 - 89,200,593 (+)	NCBI		MGSCv36	mm8
Celera	15	91,484,861 - 91,501,969 (+)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	44.84	NCBI

Ncaph2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,302,550 - 122,319,570 (+)	NCBI		GRCr8
mRatBN7.2	7	120,422,926 - 120,439,942 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,422,956 - 120,439,938 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	122,173,646 - 122,191,436 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,399,800 - 124,417,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,362,467 - 124,380,299 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,326,597 - 130,343,655 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,326,600 - 130,342,493 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,650,768 - 127,666,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	116,890,045 - 116,911,675 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Ncaph2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	33,492,348 - 33,503,804 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	60,428,408 - 60,444,629 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	63,119,266 - 63,134,153 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,754,994 - 30,771,103 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,872,496 - 49,881,027 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,873,223 - 49,881,027 (+)	Ensembl	panpan1.1		panPan2

NCAPH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	16,790,137 - 16,801,851 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	16,741,761 - 16,801,824 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	16,767,846 - 16,779,558 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	17,516,609 - 17,528,431 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	17,515,284 - 17,528,433 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	17,240,896 - 17,252,608 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	17,563,917 - 17,575,625 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	17,696,140 - 17,707,852 (-)	NCBI		UU_Cfam_GSD_1.0

NCAPH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	221,471 - 233,475 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	222,784 - 233,491 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	110,546,808 - 110,557,516 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCAPH2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	32,978,771 - 32,995,055 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	32,978,562 - 32,997,160 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	92,346,255 - 92,356,666 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncaph2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	258,039 - 268,737 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	257,885 - 268,971 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000027874 ⟹ ENSSTOP00000023896

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936629	321,011 - 327,607 (-)	Ensembl

RefSeq Acc Id:

XM_005334993 ⟹ XP_005335050

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,878 (-)	NCBI
SpeTri2.0	NW_004936629	320,885 - 327,290 (-)	NCBI

Sequence:

show sequence

CTCTGGGAACACCCAGAGACAGCTGACGGGATCAGAGCAGAGCTGGAGCTGTTGGGCTGTGGCC
GGTGGTGGGTAGGGCTTCCCTGGGCAGAATGGGCACAGACTGGGCCCTGGCTTCCTTGGCACTG
GTGTTGTTTCTTGCAGCTGGACCAGATCTGTATTTCTTTTGACGAAGGCAAAACCACAATGAAC
TTCATCGAGGCTGCACTGCTGATCCAGGGCTCAGCCTGTGTCTACAGTAAGAAGGTGGAGTACC
TCTACTCGCTGGTCTACCAGGCTCTCGATTTCATCTCTGGCAAGAGGCGAGCCAAGCAGCTGTC
CTCAGCGCAGGAAGATGGGGCCAATGGGACCACCAGCTTGGAGGCCCCCCAGGAGGCAGAGGAT
GAGTTCCTATCGCTGGACGACTTCCCTGACTCCCGTGCTAATGTAGATCTGAAGAATGACCAGG
TGCCCAGTGAGCTACTTATTGTCCCTCTCTTGCCCATGGCCCTGGTGGCCCCTGATGAAATGGA
GAAGAACAGCAGCCCTCTGTACAGCCACCAGGGTGAGGTCCTGGCCAGCCGGAAGGATTTCAGG
ATGAACACGTGCACCCCTCACCCCAGAGGGGCCTTCATGCTAGAGCCAATGGGCATGTGCCCCA
TAGAGCCTGTGGGCACGTGCACCATACCAAGAAACCAGAAGGATGCCAGGAGGACCGAGGAGCA
GCCAATGGACGTCTCTGGGTGCCGGAATCCTGTCACTGTGCTTGACTTCTCCCAGCAGCCAGGC
ACCGCTCCAGAAGGCCTAGCGCCCAGCAGTGGAGGTGAGGAGGAGGAGGAGGAGGAGGAGGTGG
CGGAGGCGGCGGCGGTGGTGGTTGACGCAGTAGAACTCCCAGAGGCCAGAGCCCCCAAGGCCAC
GGTGGAGCCTGAGGAGCCCAGGAGCCCCCACCAGAGTGCTGTCCTGACCAGGAGGTACATGTTG
CGGGAGCGAGCCCCGGACCCCATGTCCCGGCTAAAGGAGACCCCAGACCCTTGGCAGAGCCTAG
ACCCCTTTGACTCCTTGGACTCCAAGCCCTTTAAGAAAGGCAGGCCGTACTCTGTGCCCCCTTG
TGTGGAAGAGGCTCCAGGACAGAAGCGCAAGAGGAAAGCCACTGCCAAGCTACAGGACTTCCAC
CAGTGGTACCTGGCCACCTATGCTGACCACGCTGACAGCAGGAGGCCCCGGAGAAAAGGCCCAA
CTTTTGCAGACATGGAGGTTCTGTACTGGAAGCATGTGAAGGAGCAGCTGGAGACCCTCCGGAC
ATTGCAGAGGCGGGAGATAACTGAGCGGTGGCTGCCTAGGGCTGAAGAGGGCCTGTGGCCTGCA
GAGGATGACCGCCTGGAGGAGTCCTTGGAAGACCTGGGGGCAACAGCAGACGACTTTCTGGAAC
CTGAAGAGTATGTGGAGCCCGAGGAGGCAAAGCCTGGGGAGGCTGCTGACCTGGAGGCAGAGGC
CATGCCAGAGTCCCTGAGCTACGAGGAGCTGGTTCGAAGGAATGTGGAGCTCTTCATCGCCAAC
TCCCAGAAGTTTGTCCAGGAGACAGAGCTGAGCCAGCGCATCAGGGACTGGGAAGACACCATCC
AACCCCTGCTCCTGGAGCAGGAGCAGCACGTGCCCTTTGATATCCACACGTACGGGGACCAGGT
GATCTCACGATTCCCCCAGCTCAACGAGTGGTGTCCCTTTGCAGAGCTGGTGGCAGGCCAACCT
GCCTTTGAGGTGTGTCGCTCCATGCTGGCCTCCCTGCAGCTGGCCAATGACTACACAGTGGAGA
TCAGCCAACAGCCAGGGCTGGAAGCAGCTGTGGACACCATGTCTCTGAGACTGCTTACTCACCA
GCGAGCCCACAAGCGCTTCCAGACCTACACAGCTCCCTCCATGGCCCAGCCCTAAGCAGAAGCT
GTGATGGGAGGGTGGGCCAATTCTCCCTGTGTGCTGAGAGCTTGCTTCTGCCTCCTGGCTGGCC
CAGCCTAATAAAAGTTGTGTTGCCATCTCACCTACCCTTAAAACAAAACCCAC

hide sequence

RefSeq Acc Id:

XM_013362731 ⟹ XP_013218185

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,877 (-)	NCBI
SpeTri2.0	NW_004936629	320,885 - 327,289 (-)	NCBI

Sequence:

show sequence

TCTGGGAACACCCAGAGACAGCTGACGGGATCAGAGCAGAGCTGGAGCTGTTGGGCTGTGGCCG
GTGGTGGGTAGGGCTTCCCTGGGCAGAATGGGCACAGACTGGGCCCTGGCTTCCTTGGCACTGG
TGTTGTTTCTTGCAGCTGGACCAGATCTGTATTTCTTTTGACGAAGGCAAAACCACAATGAACT
TCATCGAGGCTGCACTGCTGATCCAGGGCTCAGCCTGTGTCTACAGTAAGAAGGTGGAGTACCT
CTACTCGCTGGTCTACCAGGCTCTCGATTTCATCTCTGGCAAGAGGCGAGCCAAGCAGCTGTCC
TCAGCGCAGGAAGATGGGGCCAATGGGACCACCAGCTTGGAGGCCCCCCAGGAGGCAGAGGATG
AGTTCCTATCGCTGGACGACTTCCCTGACTCCCGTGCTAATGTAGATCTGAAGAATGACCAGGT
GCCCAGTGAGCTACTTATTGTCCCTCTCTTGCCCATGGCCCTGGTGGCCCCTGATGAAATGGAG
AAGAACAGCAGCCCTCTGTACAGCCACCAGGGTGAGGTCCTGGCCAGCCGGAAGGATTTCAGGA
TGAACACGTGCACCCCTCACCCCAGAGGGGCCTTCATGCTAGAGCCAATGGGCATGTGCCCCAT
AGAGCCTGTGGGCACGTGCACCATACCAAGAAACCAGAAGGATGCCAGGAGGACCGAGGAGCAG
CCAATGGACGTCTCTGGGTGCCGGAATCCTGTCACTGTGCTTGACTTCTCCCAGCAGCCAGGCA
CCGCTCCAGAAGGCCTAGCGCCCAGCAGTGGAGGTGAGGAGGAGGAGGAGGAGGAGGAGGTGGC
GGAGGCGGCGGCGGTGGTGGTTGACGCAGTAGAACTCCCAGAGGCCAGAGCCCCCAAGGCCACG
GTGGAGCCTGAGGAGCCCAGGAGCCCCCACCAGAGTGCTGTCCTGACCAGGAGGTACATGTTGC
GGGAGCGAGCCCCGGACCCCATGTCCCGGCTAAAGGAGACCCCAGACCCTTGGCAGAGCCTAGA
CCCCTTTGACTCCTTGGACTCCAAGCCCTTTAAGAAAGGCAGGCCGTACTCTGTGCCCCCTTGT
GTGGAAGAGGCTCCAGGACAGAAGCGCAAGAGGAAAGCCACTGCCAAGCTACAGGACTTCCACC
AGTGGTACCTGGCCACCTATGCTGACCACGCTGACAGCAGGAGGCCCCGGAGAAAAGGCCCAAC
TTTTGCAGACATGGAGGTTCTGTACTGGAAGCATGTGAAGGAGCAGCTGGAGACCCTCCGGACA
TTGCAGAGGCGGGAGATAACTGAGCGGTGGCTGCCTAGGGCTGAAGAGGGCCTGTGGCCTGCAG
AGGATGACCGCCTGGAGGAGTCCTTGGAAGACCTGGGGGCAACAGACGACTTTCTGGAACCTGA
AGAGTATGTGGAGCCCGAGGAGGCAAAGCCTGGGGAGGCTGCTGACCTGGAGGCAGAGGCCATG
CCAGAGTCCCTGAGCTACGAGGAGCTGGTTCGAAGGAATGTGGAGCTCTTCATCGCCAACTCCC
AGAAGTTTGTCCAGGAGACAGAGCTGAGCCAGCGCATCAGGGACTGGGAAGACACCATCCAACC
CCTGCTCCTGGAGCAGGAGCAGCACGTGCCCTTTGATATCCACACGTACGGGGACCAGGTGATC
TCACGATTCCCCCAGCTCAACGAGTGGTGTCCCTTTGCAGAGCTGGTGGCAGGCCAACCTGCCT
TTGAGGTGTGTCGCTCCATGCTGGCCTCCCTGCAGCTGGCCAATGACTACACAGTGGAGATCAG
CCAACAGCCAGGGCTGGAAGCAGCTGTGGACACCATGTCTCTGAGACTGCTTACTCACCAGCGA
GCCCACAAGCGCTTCCAGACCTACACAGCTCCCTCCATGGCCCAGCCCTAAGCAGAAGCTGTGA
TGGGAGGGTGGGCCAATTCTCCCTGTGTGCTGAGAGCTTGCTTCTGCCTCCTGGCTGGCCCAGC
CTAATAAAAGTTGTGTTGCCATCTCACCTACCCTTAAAACAAAACCCAC

hide sequence

RefSeq Acc Id:

XM_040276200 ⟹ XP_040132134

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,880 (-)	NCBI

RefSeq Acc Id:

XM_040276205 ⟹ XP_040132139

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 332,110 (-)	NCBI

RefSeq Acc Id:

XM_040276211 ⟹ XP_040132145

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,878 (-)	NCBI

RefSeq Acc Id:

XM_040276221 ⟹ XP_040132155

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,880 (-)	NCBI

RefSeq Acc Id:

XM_040276223 ⟹ XP_040132157

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	320,877 - 327,164 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335050	(Get FASTA)	NCBI Sequence Viewer
	XP_013218185	(Get FASTA)	NCBI Sequence Viewer
	XP_040132134	(Get FASTA)	NCBI Sequence Viewer
	XP_040132139	(Get FASTA)	NCBI Sequence Viewer
	XP_040132145	(Get FASTA)	NCBI Sequence Viewer
	XP_040132155	(Get FASTA)	NCBI Sequence Viewer
	XP_040132157	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000023896.2

RefSeq Acc Id:	XP_005335050 ⟸ XM_005334993
- Peptide Label:	isoform X3
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSAQEDGANGTTSLEAPQEA EDEFLSLDDFPDSRANVDLKNDQVPSELLIVPLLPMALVAPDEMEKNSSPLYSHQGEVLASRKD FRMNTCTPHPRGAFMLEPMGMCPIEPVGTCTIPRNQKDARRTEEQPMDVSGCRNPVTVLDFSQQ PGTAPEGLAPSSGGEEEEEEEEVAEAAAVVVDAVELPEARAPKATVEPEEPRSPHQSAVLTRRY MLRERAPDPMSRLKETPDPWQSLDPFDSLDSKPFKKGRPYSVPPCVEEAPGQKRKRKATAKLQD FHQWYLATYADHADSRRPRRKGPTFADMEVLYWKHVKEQLETLRTLQRREITERWLPRAEEGLW PAEDDRLEESLEDLGATADDFLEPEEYVEPEEAKPGEAADLEAEAMPESLSYEELVRRNVELFI ANSQKFVQETELSQRIRDWEDTIQPLLLEQEQHVPFDIHTYGDQVISRFPQLNEWCPFAELVAG QPAFEVCRSMLASLQLANDYTVEISQQPGLEAAVDTMSLRLLTHQRAHKRFQTYTAPSMAQP hide sequence

RefSeq Acc Id:	XP_013218185 ⟸ XM_013362731
- Peptide Label:	isoform X4
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSAQEDGANGTTSLEAPQEA EDEFLSLDDFPDSRANVDLKNDQVPSELLIVPLLPMALVAPDEMEKNSSPLYSHQGEVLASRKD FRMNTCTPHPRGAFMLEPMGMCPIEPVGTCTIPRNQKDARRTEEQPMDVSGCRNPVTVLDFSQQ PGTAPEGLAPSSGGEEEEEEEEVAEAAAVVVDAVELPEARAPKATVEPEEPRSPHQSAVLTRRY MLRERAPDPMSRLKETPDPWQSLDPFDSLDSKPFKKGRPYSVPPCVEEAPGQKRKRKATAKLQD FHQWYLATYADHADSRRPRRKGPTFADMEVLYWKHVKEQLETLRTLQRREITERWLPRAEEGLW PAEDDRLEESLEDLGATDDFLEPEEYVEPEEAKPGEAADLEAEAMPESLSYEELVRRNVELFIA NSQKFVQETELSQRIRDWEDTIQPLLLEQEQHVPFDIHTYGDQVISRFPQLNEWCPFAELVAGQ PAFEVCRSMLASLQLANDYTVEISQQPGLEAAVDTMSLRLLTHQRAHKRFQTYTAPSMAQP hide sequence

RefSeq Acc Id:	XP_040132139 ⟸ XM_040276205
- Peptide Label:	isoform X1
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132155 ⟸ XM_040276221
- Peptide Label:	isoform X5
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132134 ⟸ XM_040276200
- Peptide Label:	isoform X1
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132145 ⟸ XM_040276211
- Peptide Label:	isoform X2
- UniProtKB:	I3NHP9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132157 ⟸ XM_040276223
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSSTOP00000023896 ⟸ ENSSTOT00000027874

Protein Domains

Condensin II complex subunit H2 middle Condensin II complex subunit H2 N-terminal Condensin-2 complex subunit H2 C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022417	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000027874.2	UniProtKB/TrEMBL
InterPro	CNDH2_C	UniProtKB/TrEMBL
	H2_M	UniProtKB/TrEMBL
	H2_N	UniProtKB/TrEMBL
	Ncaph2	UniProtKB/TrEMBL
NCBI Gene	Ncaph2	ENTREZGENE
PANTHER	CONDENSIN-2 COMPLEX SUBUNIT H2	UniProtKB/TrEMBL
	PTHR14324	UniProtKB/TrEMBL
Pfam	CNDH2_C	UniProtKB/TrEMBL
	CNDH2_M	UniProtKB/TrEMBL
	CNDH2_N	UniProtKB/TrEMBL
UniProt	I3NHP9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar