Znf629 (zinc finger protein 629) - Rat Genome Database

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Gene: Znf629 (zinc finger protein 629) Ictidomys tridecemlineatus
Analyze
Symbol: Znf629
Name: zinc finger protein 629
RGD ID: 12480807
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); generalized epilepsy with febrile seizures plus 9 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,072,686 - 125,101,039 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,170,571 - 13,179,297 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,170,546 - 13,179,299 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
Znf629
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,072,686 - 125,101,039 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,170,571 - 13,179,297 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,170,546 - 13,179,299 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF629
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,778,456 - 30,787,205 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,778,456 - 30,787,205 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,789,777 - 30,798,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,697,271 - 30,706,024 (-)NCBINCBI36Build 36hg18NCBI36
Celera1629,498,892 - 29,507,651 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,352,601 - 28,361,366 (-)NCBIHuRef
CHM1_11632,106,931 - 32,115,684 (-)NCBICHM1_1
T2T-CHM13v2.01631,165,899 - 31,174,664 (-)NCBIT2T-CHM13v2.0
Zfp629
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,206,203 - 127,215,053 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,206,203 - 127,214,969 (-)EnsemblGRCm39 Ensembl
GRCm387127,607,028 - 127,615,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,607,031 - 127,615,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,750,549 - 134,757,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,398,183 - 127,405,581 (-)NCBIMGSCv36mm8
Celera7127,451,941 - 127,459,339 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.62NCBI
Zfp629
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,648,753 - 191,689,082 (-)NCBIGRCr8
mRatBN7.21182,217,499 - 182,258,585 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,210,935 - 182,230,016 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,571,588 - 190,579,791 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,757,670 - 197,765,873 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,428,176 - 190,436,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,052,430 - 199,065,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,894,000 - 199,064,150 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,075,838 - 206,117,168 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,894,514 - 186,902,921 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,046,159 - 187,052,621 (-)NCBI
Celera1179,872,825 - 179,881,028 (-)NCBICelera
Cytogenetic Map1q37NCBI
Znf629
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,641,141 - 7,649,927 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,641,141 - 7,649,927 (-)NCBIChiLan1.0ChiLan1.0
ZNF629
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,983,862 - 33,996,078 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,785,321 - 38,797,534 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,181,152 - 24,191,053 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,145,520 - 31,154,196 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,145,520 - 31,154,196 (-)Ensemblpanpan1.1panPan2
ZNF629
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,371,716 - 17,398,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,340,326 - 17,395,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,965,612 - 18,973,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,447,764 - 17,530,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,502,739 - 17,530,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,248,092 - 17,330,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,167,210 - 17,248,671 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,479,756 - 17,561,472 (+)NCBIUU_Cfam_GSD_1.0
ZNF629
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,610,293 - 17,618,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,610,100 - 17,622,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,056,249 - 18,068,098 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF629
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,466,199 - 27,476,063 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,466,162 - 27,472,607 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,000,324 - 2,009,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf629
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,902,342 - 13,905,944 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,899,232 - 13,906,736 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026742   ⟹   ENSSTOP00000018012
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650113,170,571 - 13,179,297 (-)Ensembl
RefSeq Acc Id: XM_005323865   ⟹   XP_005323922
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,072,686 - 125,081,442 (-)NCBI
SpeTri2.0NW_00493650113,170,546 - 13,179,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277524   ⟹   XP_040133458
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,072,686 - 125,101,039 (-)NCBI
RefSeq Acc Id: XM_040277525   ⟹   XP_040133459
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,072,686 - 125,080,929 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005323922 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133458 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133459 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018012.1
GenBank Protein KAG3259664 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005323922   ⟸   XM_005323865
- Peptide Label: isoform X2
- UniProtKB: I3N0W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133458   ⟸   XM_040277524
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040133459   ⟸   XM_040277525
- Peptide Label: isoform X2
- UniProtKB: I3N0W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000018012   ⟸   ENSSTOT00000026742
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025541 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026742.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf629 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 46 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3N0W6 ENTREZGENE, UniProtKB/TrEMBL