LOC101966363 (monocarboxylate transporter 1) - Rat Genome Database

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Gene: LOC101966363 (monocarboxylate transporter 1) Ictidomys tridecemlineatus
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Symbol: LOC101966363
Name: monocarboxylate transporter 1
RGD ID: 12480263
Description: ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); INVOLVED IN behavioral response to nutrient (ortholog); carboxylic acid transmembrane transport (ortholog); cellular response to organic cyclic compound (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Colonic Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Slc16a1; solute carrier family 16 member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBI
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC101966363
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBI
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1112,911,847 - 112,957,593 (-)EnsemblGRCh38hg38GRCh38
GRCh381112,911,847 - 112,956,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371113,454,469 - 113,498,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,255,992 - 113,300,498 (-)NCBINCBI36hg18NCBI36
Build 341113,166,895 - 113,210,847NCBI
Celera1111,683,316 - 111,727,817 (-)NCBI
Cytogenetic Map1p13.2NCBI
HuRef1111,313,328 - 111,357,846 (-)NCBIHuRef
CHM1_11113,569,526 - 113,614,046 (-)NCBICHM1_1
Slc16a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,545,980 - 104,565,778 (+)NCBIGRCm39mm39
GRCm39 Ensembl3104,545,984 - 104,565,778 (+)Ensembl
GRCm383104,638,664 - 104,658,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,638,668 - 104,658,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,442,591 - 104,462,385 (+)NCBIGRCm37mm9NCBIm37
MGSCv363104,767,729 - 104,787,523 (+)NCBImm8
Celera3106,835,859 - 106,855,656 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Slc16a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22192,123,755 - 192,144,617 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2192,124,289 - 192,144,611 (+)Ensembl
Rnor_6.02207,108,552 - 207,129,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,108,552 - 207,128,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,529,294 - 226,549,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,860,341 - 199,879,856 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12199,823,090 - 199,843,400 (+)NCBI
Celera2184,591,461 - 184,610,976 (+)NCBICelera
Cytogenetic Map2q34NCBI
Slc16a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBIChiLan1.0ChiLan1.0
SLC16A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11124,755,250 - 124,800,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBIMhudiblu_PPA_v0panPan3
SLC16A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,636,600 - 62,690,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,622,902 - 62,787,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,150,910 - 62,209,599 (+)NCBI
ROS_Cfam_1.01763,810,274 - 63,868,497 (+)NCBI
UMICH_Zoey_3.11762,545,706 - 62,604,231 (+)NCBI
UNSW_CanFamBas_1.01762,603,038 - 62,661,526 (+)NCBI
UU_Cfam_GSD_1.01763,362,876 - 63,421,192 (+)NCBI
SLC16A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,494,463 - 107,641,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,510,920 - 107,547,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,603,634 - 117,614,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,694,222 - 20,741,542 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,727,199 - 20,739,979 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603823,493,479 - 23,537,747 (+)NCBIVero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337636   ⟹   XP_005337693
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBI
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337693 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281246 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337693   ⟸   XM_005337636
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006137 ENTREZGENE
Ensembl Protein ENSSTOP00000005479 ENTREZGENE
Ensembl Transcript ENSSTOT00000006124 ENTREZGENE
NCBI Gene Slc16a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101966363  monocarboxylate transporter 1  Slc16a1  solute carrier family 16 member 1  Symbol and/or name change 5135510 APPROVED