LOC101966363 (monocarboxylate transporter 1) - Rat Genome Database

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Gene: LOC101966363 (monocarboxylate transporter 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101966363 (Ensembl: SLC16A1)
Name: monocarboxylate transporter 1 (Ensembl:solute carrier family 16 member 1)
RGD ID: 12480263
Description: ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); organic cyclic compound binding (ortholog); INVOLVED IN carboxylic acid transmembrane transport (ortholog); cellular response to organic cyclic compound (ortholog); lactate transmembrane transport (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Slc16a1; solute carrier family 16 member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,450,092 - 1,461,481 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101966363
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,450,092 - 1,461,481 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,911,847 - 112,956,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,911,847 - 112,957,593 (-)EnsemblGRCh38hg38GRCh38
GRCh371113,454,469 - 113,498,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,255,992 - 113,300,498 (-)NCBINCBI36Build 36hg18NCBI36
Build 341113,166,895 - 113,210,847NCBI
Celera1111,683,316 - 111,727,817 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1111,313,328 - 111,357,846 (-)NCBIHuRef
CHM1_11113,569,526 - 113,614,046 (-)NCBICHM1_1
T2T-CHM13v2.01112,924,405 - 112,968,780 (-)NCBIT2T-CHM13v2.0
Slc16a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,545,980 - 104,565,778 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,545,984 - 104,565,778 (+)EnsemblGRCm39 Ensembl
GRCm383104,638,664 - 104,658,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,638,668 - 104,658,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,442,591 - 104,462,385 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,767,729 - 104,787,523 (+)NCBIMGSCv36mm8
Celera3106,835,859 - 106,855,656 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.7NCBI
Slc16a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,805,556 - 194,832,966 (+)NCBIGRCr8
mRatBN7.22192,123,755 - 192,144,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2192,124,289 - 192,144,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,718,059 - 199,737,573 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,590,762 - 197,610,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,407,716 - 192,427,233 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02207,108,552 - 207,129,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,108,552 - 207,128,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,529,294 - 226,549,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,860,341 - 199,879,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12199,823,090 - 199,843,400 (+)NCBI
Celera2184,591,461 - 184,610,976 (+)NCBICelera
Cytogenetic Map2q34NCBI
Slc16a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBIChiLan1.0ChiLan1.0
SLC16A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,087,768 - 114,133,440 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,235,844 - 113,281,509 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11124,755,250 - 124,800,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensemblpanpan1.1panPan2
SLC16A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,636,600 - 62,690,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,622,902 - 62,787,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,150,910 - 62,209,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,810,274 - 63,868,497 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1763,815,622 - 63,983,167 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,545,706 - 62,604,231 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,603,038 - 62,661,526 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,362,876 - 63,421,192 (+)NCBIUU_Cfam_GSD_1.0
SLC16A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,494,463 - 107,641,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,510,920 - 107,547,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,603,634 - 117,614,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,694,222 - 20,741,542 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,727,199 - 20,739,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,493,479 - 23,537,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006124   ⟹   ENSSTOP00000005479
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366901,450,092 - 1,461,481 (-)Ensembl
RefSeq Acc Id: XM_005337636   ⟹   XP_005337693
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBI
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005479.3
GenBank Protein KAG3281246 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005337693   ⟸   XM_005337636
- UniProtKB: I3M7A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000005479   ⟸   ENSSTOT00000006124
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006137 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006124.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MCT UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc16a1 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF24 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3M7A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101966363  monocarboxylate transporter 1  Slc16a1  solute carrier family 16 member 1  Symbol and/or name change 5135510 APPROVED