LOC101960259 (carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein) - Rat Genome Database

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Gene: LOC101960259 (carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein) Ictidomys tridecemlineatus
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Symbol: LOC101960259 (Ensembl: C1orf226)
Name: carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein (Ensembl:chromosome 1 open reading frame 226)
RGD ID: 12480160
Description: ENCODES a protein that exhibits nitric-oxide synthase binding (inferred); INVOLVED IN postsynaptic actin cytoskeleton organization (inferred); regulation of heart rate by chemical signal (inferred); regulation of ventricular cardiac muscle cell membrane repolarization (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN caveola (inferred); glutamatergic synapse (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C1orf226 homolog; CUNH1orf226; nitric oxide synthase 1 (neuronal) adaptor protein; Nos1ap; uncharacterized protein C1orf226; uncharacterized protein C1orf226 homolog; uncharacterized protein LOC101960259
RGD Orthologs
Human
Mouse
Rat
Bonobo
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,955,795 - 8,275,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936831271,593 - 572,479 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936831583,823 - 588,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936831271,604 - 591,461 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101960259
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,955,795 - 8,275,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936831271,593 - 572,479 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936831583,823 - 588,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936831271,604 - 591,461 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1orf226
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,378,841 - 162,386,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,378,841 - 162,386,812 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,348,631 - 162,356,602 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,618,144 - 160,623,232 (+)NCBINCBI36Build 36hg18NCBI36
Celera1135,451,762 - 135,459,674 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1133,593,360 - 133,601,328 (+)NCBIHuRef
CHM1_11163,770,384 - 163,778,296 (+)NCBICHM1_1
T2T-CHM13v2.01161,722,817 - 161,730,827 (+)NCBIT2T-CHM13v2.0
Gm7694
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,125,767 - 170,133,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,125,768 - 170,133,901 (-)EnsemblGRCm39 Ensembl
GRCm381170,298,193 - 170,306,332 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,298,199 - 170,306,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,231,277 - 172,237,109 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,137,821 - 172,143,007 (-)NCBIMGSCv36mm8
Celera1172,734,053 - 172,739,885 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map176.84NCBI
C13h1orf226
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81385,063,350 - 85,071,435 (-)NCBIGRCr8
mRatBN7.21382,530,589 - 82,538,676 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1382,530,577 - 82,820,949 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1385,160,508 - 85,165,634 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01386,454,142 - 86,459,278 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01383,685,735 - 83,690,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01388,636,875 - 88,642,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1388,636,875 - 88,943,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01393,262,801 - 93,267,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1382,192,096 - 82,197,232 (-)NCBICelera
Cytogenetic Map13q24NCBI
LOC100983469
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2187,398,510 - 87,711,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1187,066,664 - 87,379,264 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01137,487,845 - 137,800,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11141,285,873 - 141,598,205 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1141,285,960 - 141,578,899 (+)Ensemblpanpan1.1panPan2
CUNH1orf226
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624826542,099 - 850,745 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_004624826863,582 - 870,054 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624826542,107 - 873,112 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000010581   ⟹   ENSSTOP00000009497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936831271,593 - 572,479 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000026899   ⟹   ENSSTOP00000020489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936831583,823 - 588,524 (+)Ensembl
RefSeq Acc Id: XM_021720622   ⟹   XP_021576297
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050588,266,821 - 8,275,581 (+)NCBI
SpeTri2.0NW_004936831582,526 - 591,461 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287313   ⟹   XP_040143247
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,955,795 - 8,275,581 (+)NCBI
RefSeq Acc Id: XM_040287314   ⟹   XP_040143248
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,955,795 - 8,275,581 (+)NCBI
RefSeq Acc Id: XM_040287315   ⟹   XP_040143249
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,955,795 - 8,275,581 (+)NCBI
RefSeq Acc Id: XM_040287316   ⟹   XP_040143250
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050588,224,585 - 8,275,581 (+)NCBI
RefSeq Acc Id: XM_040287317   ⟹   XP_040143251
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,955,795 - 8,258,305 (+)NCBI
RefSeq Acc Id: XM_040287318   ⟹   XP_040143252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050588,266,217 - 8,275,579 (+)NCBI
RefSeq Acc Id: XM_040287319   ⟹   XP_040143253
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050588,266,183 - 8,275,579 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021576297   ⟸   XM_021720622
- Peptide Label: isoform X6
- UniProtKB: I3N7Z3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143247   ⟸   XM_040287313
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143249   ⟸   XM_040287315
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040143248   ⟸   XM_040287314
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143251   ⟸   XM_040287317
- Peptide Label: isoform X5
- UniProtKB: I3MFS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143250   ⟸   XM_040287316
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040143253   ⟸   XM_040287319
- Peptide Label: isoform X7
- UniProtKB: I3N7Z3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143252   ⟸   XM_040287318
- Peptide Label: isoform X7
- UniProtKB: I3N7Z3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000020489   ⟸   ENSSTOT00000026899
RefSeq Acc Id: ENSSTOP00000009497   ⟸   ENSSTOT00000010581
Protein Domains
PID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010583 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000034532 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010581.3 UniProtKB/TrEMBL
  ENSSTOT00000026899.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro DUF4628 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
NCBI Gene LOC101960259 ENTREZGENE
PANTHER CARBOXYL-TERMINAL PDZ LIGAND OF NEURONAL NITRIC OXIDE SYNTHASE PROTEIN UniProtKB/TrEMBL
  PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
Pfam DUF4628 UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
PROSITE PID UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt I3MFS1 ENTREZGENE, UniProtKB/TrEMBL
  I3N7Z3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101960259  carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein  CUNH1orf226  chromosome unknown C1orf226 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH1orf226  chromosome unknown C1orf226 homolog  LOC101960259  carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein  Symbol and/or name change 5135510 APPROVED