Pnpt1 (polyribonucleotide nucleotidyltransferase 1) - Rat Genome Database

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Gene: Pnpt1 (polyribonucleotide nucleotidyltransferase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Pnpt1
Name: polyribonucleotide nucleotidyltransferase 1
RGD ID: 12479482
Description: ENCODES a protein that exhibits polyribonucleotide nucleotidyltransferase activity (ortholog); INVOLVED IN liver regeneration (ortholog); positive regulation of mRNA catabolic process (ortholog); response to cAMP (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 70 (ortholog); combined oxidative phosphorylation deficiency 13 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nucleus (ortholog); polysomal ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyribonucleotide nucleotidyltransferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,538,923 - 26,583,394 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364911,989,429 - 2,032,430 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Pnpt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,538,923 - 26,583,394 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364911,989,429 - 2,032,430 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,634,061 - 55,693,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl255,634,061 - 55,693,863 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,861,196 - 55,920,979 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,715,956 - 55,774,463 (-)NCBINCBI36Build 36hg18NCBI36
Build 34255,774,117 - 55,832,610NCBI
Celera255,701,589 - 55,761,360 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,596,276 - 55,655,947 (-)NCBIHuRef
CHM1_1255,791,555 - 55,851,305 (-)NCBICHM1_1
T2T-CHM13v2.0255,631,213 - 55,690,978 (-)NCBIT2T-CHM13v2.0
Pnpt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,080,236 - 29,112,010 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,080,744 - 29,111,828 (+)EnsemblGRCm39 Ensembl
GRCm381129,130,129 - 29,161,827 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,130,744 - 29,161,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,030,751 - 29,061,828 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,030,751 - 29,061,828 (+)NCBIMGSCv36mm8
Celera1131,494,148 - 31,527,000 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
Pnpt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214102,877,553 - 102,908,696 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,877,553 - 102,908,696 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14107,212,708 - 107,243,868 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.014108,449,467 - 108,480,655 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.014104,921,883 - 104,953,071 (+)NCBIRnor_WKY
Rnor_6.014113,530,470 - 113,561,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,530,470 - 113,561,645 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,205,574 - 113,236,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,130,417 - 110,161,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,156,766 - 110,187,382 (+)NCBI
Celera14101,762,647 - 101,794,453 (+)NCBICelera
Cytogenetic Map14q22NCBI
Pnpt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,407,489 - 27,448,992 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,407,451 - 27,449,830 (+)NCBIChiLan1.0ChiLan1.0
PNPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A56,931,110 - 56,986,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,931,365 - 56,986,326 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A55,792,412 - 55,848,242 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PNPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,478,771 - 56,520,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,478,680 - 56,520,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,435,176 - 56,478,020 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,482,766 - 57,525,822 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,482,669 - 57,525,810 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,184,232 - 57,226,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,463,411 - 57,505,932 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,754,350 - 57,797,122 (-)NCBIUU_Cfam_GSD_1.0
PNPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,595,392 - 85,639,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,595,356 - 85,639,665 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,333,302 - 90,422,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PNPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,211,385 - 51,267,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,211,118 - 51,267,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,453,832 - 60,510,342 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnpt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248335,883,318 - 5,923,758 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248335,883,300 - 5,923,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005322027   ⟹   XP_005322084
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629226,538,923 - 26,583,394 (+)NCBI
SpeTri2.0NW_0049364911,989,429 - 2,032,430 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322084 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3267301 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005322084   ⟸   XM_005322027
- UniProtKB: I3N887 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
S1 motif


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006304 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000020583 ENTREZGENE
  ENSSTOP00000020583.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028956.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/TrEMBL
  3.30.230.70 UniProtKB/TrEMBL
InterPro ExoRNase_PH_dom1 UniProtKB/TrEMBL
  ExoRNase_PH_dom2 UniProtKB/TrEMBL
  ExoRNase_PH_dom2_sf UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  PNPase UniProtKB/TrEMBL
  PNPase/RNase_PH_dom_sf UniProtKB/TrEMBL
  PNPase_PH_RNA-bd_bac/org-type UniProtKB/TrEMBL
  PNPase_PH_RNA-bd_sf UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  S1_dom UniProtKB/TrEMBL
  S1_domain UniProtKB/TrEMBL
NCBI Gene Pnpt1 ENTREZGENE
PANTHER PTHR11252 UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  PNPase UniProtKB/TrEMBL
  RNase_PH UniProtKB/TrEMBL
  RNase_PH_C UniProtKB/TrEMBL
PIRSF PNPase UniProtKB/TrEMBL
PROSITE PS50126 UniProtKB/TrEMBL
SMART SM00316 UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF46915 UniProtKB/TrEMBL
  SSF50249 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
  SSF55666 UniProtKB/TrEMBL
TIGRFAMs polynuc_phos UniProtKB/TrEMBL
UniProt I3N887 ENTREZGENE, UniProtKB/TrEMBL