Kctd9 (potassium channel tetramerization domain containing 9) - Rat Genome Database

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Gene: Kctd9 (potassium channel tetramerization domain containing 9) Ictidomys tridecemlineatus
Analyze
Symbol: Kctd9
Name: potassium channel tetramerization domain containing 9
RGD ID: 12479369
Description: ENCODES a protein that exhibits cullin family protein binding (inferred); identical protein binding (inferred); obsolete protein self-association (inferred); INVOLVED IN intracellular signal transduction (inferred); protein homooligomerization (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2E (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD9; potassium channel tetramerization domain containing 9, transcript variant X1; potassium channel tetramerization domain containing 9, transcript variant X2; potassium channel tetramerization domain containing 9, transcript variant X3; potassium channel tetramerization domain containing 9, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,997,450 - 10,021,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,250,039 - 1,276,089 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,250,089 - 1,276,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kctd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,997,450 - 10,021,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,250,039 - 1,276,089 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,250,089 - 1,276,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,427,847 - 25,458,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,427,847 - 25,458,476 (-)EnsemblGRCh38hg38GRCh38
GRCh37825,285,363 - 25,315,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,341,280 - 25,371,837 (-)NCBINCBI36Build 36hg18NCBI36
Build 34825,341,282 - 25,371,837NCBI
Celera824,246,240 - 24,277,531 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,830,337 - 23,860,955 (-)NCBIHuRef
CHM1_1825,486,843 - 25,517,450 (-)NCBICHM1_1
T2T-CHM13v2.0825,703,069 - 25,733,653 (-)NCBIT2T-CHM13v2.0
Kctd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,953,536 - 67,979,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,953,386 - 67,979,759 (+)EnsemblGRCm39 Ensembl
GRCm381467,716,086 - 67,742,310 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,715,937 - 67,742,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv371468,334,155 - 68,360,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,669,615 - 66,695,491 (+)NCBIMGSCv36mm8
Celera1465,473,744 - 65,499,952 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Kctd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,117,211 - 46,145,258 (+)NCBIGRCr8
mRatBN7.21541,942,165 - 41,969,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,942,381 - 41,969,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,807,174 - 43,834,525 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,957,395 - 44,984,746 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,402,708 - 43,430,079 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,411,591 - 44,439,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,411,865 - 44,439,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01547,157,550 - 47,185,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41547,272,273 - 47,300,689 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11547,288,063 - 47,316,332 (+)NCBI
Celera1541,606,740 - 41,634,111 (+)NCBICelera
Cytogenetic Map15p12NCBI
Kctd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,349,354 - 48,373,903 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,349,349 - 48,373,903 (-)NCBIChiLan1.0ChiLan1.0
KCTD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,969,230 - 43,999,404 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,683,578 - 19,713,632 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,708,896 - 24,739,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,618,042 - 21,648,309 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,618,042 - 21,648,309 (-)Ensemblpanpan1.1panPan2
KCTD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,998,344 - 32,035,575 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,996,289 - 32,034,089 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2532,582,210 - 32,620,208 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02532,196,430 - 32,234,869 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,196,518 - 32,233,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,152,127 - 32,190,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02532,001,626 - 32,040,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,167,633 - 32,205,839 (+)NCBIUU_Cfam_GSD_1.0
KCTD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,455,071 - 9,517,691 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,453,086 - 9,517,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,607,869 - 10,682,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,552,420 - 23,581,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,554,235 - 23,581,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,585,362 - 18,615,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,454,965 - 20,488,868 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475820,454,965 - 20,490,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008793   ⟹   ENSSTOP00000007882
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367571,250,039 - 1,276,089 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031999   ⟹   ENSSTOP00000024048
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367571,250,306 - 1,274,098 (+)Ensembl
RefSeq Acc Id: XM_005339894   ⟹   XP_005339951
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049439,997,450 - 10,021,598 (+)NCBI
SpeTri2.0NW_0049367571,250,089 - 1,276,089 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013365013   ⟹   XP_013220467
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049439,997,485 - 10,021,598 (+)NCBI
SpeTri2.0NW_0049367571,250,117 - 1,275,924 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013365014   ⟹   XP_013220468
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049439,997,908 - 10,021,598 (+)NCBI
SpeTri2.0NW_0049367571,250,527 - 1,275,924 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005339951   ⟸   XM_005339894
- Peptide Label: isoform X2
- UniProtKB: I3MCA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220467   ⟸   XM_013365013
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013220468   ⟸   XM_013365014
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSTOP00000024048   ⟸   ENSSTOT00000031999
RefSeq Acc Id: ENSSTOP00000007882   ⟸   ENSSTOT00000008793
Protein Domains
BTB   KHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008797 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008793.3 UniProtKB/TrEMBL
  ENSSTOT00000031999.1 UniProtKB/TrEMBL
Gene3D-CATH E3 ubiquitin-protein ligase SopA UniProtKB/TrEMBL
InterPro 5peptide_repeat UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
  KHA_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
NCBI Gene Kctd9 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD9 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  KHA UniProtKB/TrEMBL
  Pentapeptide UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  KHA UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP Pentapeptide repeat-like UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
  SSF89837 UniProtKB/TrEMBL
UniProt A0A287CRZ9_ICTTR UniProtKB/TrEMBL
  I3MCA9 ENTREZGENE, UniProtKB/TrEMBL