Strit1 (small transmembrane regulator of ion transport 1) - Rat Genome Database

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Gene: Strit1 (small transmembrane regulator of ion transport 1) Ictidomys tridecemlineatus
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Symbol: Strit1
Name: small transmembrane regulator of ion transport 1
RGD ID: 124792651
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN positive regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); positive regulation of calcium ion import (ortholog); positive regulation of calcium ion import into sarcoplasmic reticulum (ortholog); FOUND IN sarcoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sarcoplasmic/endoplasmic reticulum calcium ATPase regulator DWORF
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560287,066,687 - 87,069,867 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365192,664,278 - 2,666,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Strit1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560287,066,687 - 87,069,867 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365192,664,278 - 2,666,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
STRIT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383155,290,227 - 155,293,683 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3155,290,227 - 155,293,683 (-)EnsemblGRCh38hg38GRCh38
GRCh373155,008,016 - 155,011,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.2NCBI
HuRef3152,402,230 - 152,405,698 (-)NCBIHuRef
CHM1_13154,971,058 - 154,974,543 (-)NCBICHM1_1
T2T-CHM13v2.03158,064,207 - 158,067,663 (-)NCBIT2T-CHM13v2.0
Strit1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39363,388,516 - 63,391,327 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl363,388,533 - 63,391,300 (-)EnsemblGRCm39 Ensembl
GRCm38363,481,095 - 63,483,906 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl363,481,112 - 63,483,879 (-)EnsemblGRCm38mm10GRCm38
Celera363,154,551 - 63,157,363 (-)NCBICelera
Cytogenetic Map3E1NCBI
Strit1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82150,084,857 - 150,087,721 (-)NCBIGRCr8
mRatBN7.22147,935,219 - 147,938,083 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2147,935,222 - 147,938,083 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2154,629,554 - 154,632,416 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02152,679,003 - 152,681,865 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02147,311,691 - 147,314,553 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02154,030,401 - 154,033,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2154,030,237 - 154,033,351 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02173,418,567 - 173,421,475 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2142,221,795 - 142,224,659 (-)NCBICelera
Cytogenetic Map2q31NCBI
STRIT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22153,203,629 - 153,209,586 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13153,208,359 - 153,214,323 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03152,346,768 - 152,351,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13160,398,665 - 160,402,152 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3160,399,367 - 160,402,051 (-)Ensemblpanpan1.1panPan2
STRIT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12349,131,218 - 49,134,728 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2349,131,221 - 49,134,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2349,006,134 - 49,027,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02349,764,376 - 49,785,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2349,764,379 - 49,768,122 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12349,350,344 - 49,371,236 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02349,400,356 - 49,421,263 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02349,683,533 - 49,704,426 (-)NCBIUU_Cfam_GSD_1.0
STRIT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660418,116,308 - 8,120,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Sequence


Ensembl Acc Id: ENSSTOT00000032899   ⟹   ENSSTOP00000024142
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365192,664,278 - 2,666,850 (-)Ensembl
RefSeq Acc Id: XM_040268271   ⟹   XP_040124205
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560287,066,687 - 87,069,867 (+)NCBI
RefSeq Acc Id: XM_040268272   ⟹   XP_040124206
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560287,066,689 - 87,069,867 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040124205 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124206 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000024142.1
GenBank Protein KAG3270862 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040124205   ⟸   XM_040268271
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124206   ⟸   XM_040268272
- Peptide Label: isoform X2
- UniProtKB: A0A287CS93 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000024142   ⟸   ENSSTOT00000032899


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030767 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000032899.1 UniProtKB/TrEMBL
InterPro DWORF UniProtKB/TrEMBL
NCBI Gene Strit1 ENTREZGENE
Pfam DWORF UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A287CS93 ENTREZGENE, UniProtKB/TrEMBL