Trim11 (tripartite motif containing 11) - Rat Genome Database

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Gene: Trim11 (tripartite motif containing 11) Ictidomys tridecemlineatus
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Symbol: Trim11
Name: tripartite motif containing 11
RGD ID: 12478165
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of neurogenesis (ortholog); negative regulation of transcription, DNA-templated (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,076,008 - 87,085,815 (+)NCBI
SpeTri2.0NW_00493713511,350 - 21,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Trim11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,076,008 - 87,085,815 (+)NCBI
SpeTri2.0NW_00493713511,350 - 21,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1228,393,673 - 228,406,835 (-)EnsemblGRCh38hg38GRCh38
GRCh381228,393,672 - 228,406,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371228,581,377 - 228,594,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,648,000 - 226,661,140 (-)NCBINCBI36hg18NCBI36
Build 341224,888,113 - 224,901,252NCBI
Celera1201,771,344 - 201,784,479 (-)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1199,095,985 - 199,109,126 (-)NCBIHuRef
CHM1_11229,853,700 - 229,866,840 (-)NCBICHM1_1
Trim11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,865,054 - 58,882,288 (+)NCBIGRCm39mm39
GRCm39 Ensembl1158,868,919 - 58,882,284 (+)Ensembl
GRCm381158,973,726 - 58,991,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,978,093 - 58,991,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,791,618 - 58,804,960 (+)NCBIGRCm37mm9NCBIm37
MGSCv361158,794,311 - 58,807,653 (+)NCBImm8
Celera1163,744,428 - 63,757,877 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
Trim11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21043,758,305 - 43,771,138 (+)NCBI
Rnor_6.0 Ensembl1045,322,248 - 45,335,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01045,322,199 - 45,335,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01045,078,796 - 45,091,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,270,583 - 45,283,954 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,284,255 - 45,294,925 (+)NCBI
Celera1043,024,655 - 43,037,489 (+)NCBICelera
Cytogenetic Map10q22NCBI
Trim11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581114,750 - 125,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581114,750 - 123,410 (+)NCBIChiLan1.0ChiLan1.0
TRIM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11209,006,979 - 209,019,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1209,006,979 - 209,019,994 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01203,795,924 - 203,809,703 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114640,375 - 647,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14511,392 - 518,438 (-)NCBI
ROS_Cfam_1.014356,380 - 363,429 (+)NCBI
UMICH_Zoey_3.114543,563 - 550,609 (+)NCBI
UNSW_CanFamBas_1.014304,219 - 311,263 (+)NCBI
UU_Cfam_GSD_1.014313,608 - 320,656 (+)NCBI
TRIM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,733,180 - 51,743,256 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,729,333 - 51,743,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,322,817 - 1,336,535 (+)NCBI
ChlSab1.1 Ensembl251,323,528 - 1,335,504 (+)Ensembl
Vero_WHO_p1.0NW_0236660551,201,555 - 1,215,589 (+)NCBI
Trim11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249371,100,297 - 1,109,017 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005342555   ⟹   XP_005342612
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721387,076,008 - 87,085,815 (+)NCBI
SpeTri2.0NW_00493713511,350 - 21,235 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342612 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3265090 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005342612   ⟸   XM_005342555
- UniProtKB: I3MYW1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023751 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000017307 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025709 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Trim11 ENTREZGENE
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt I3MYW1 ENTREZGENE, UniProtKB/TrEMBL