LOC101958553 (olfactory receptor 52B2) - Rat Genome Database

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Pathways
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Gene: LOC101958553 (olfactory receptor 52B2) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101958553 (Ensembl: OR52B2)
Name: olfactory receptor 52B2
RGD ID: 12478152
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OR52B2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,429,310 - 56,432,640 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842243,604 - 244,572 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842243,604 - 244,849 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC101958553
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,429,310 - 56,432,640 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842243,604 - 244,572 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842243,604 - 244,849 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OR52B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,169,355 - 6,170,326 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,169,355 - 6,170,326 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,190,585 - 6,191,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,147,161 - 6,148,132 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,147,160 - 6,148,132NCBI
Celera116,310,097 - 6,311,068 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,851,194 - 5,852,165 (-)NCBIHuRef
CHM1_1116,189,812 - 6,190,783 (-)NCBICHM1_1
T2T-CHM13v2.0116,227,801 - 6,228,772 (-)NCBIT2T-CHM13v2.0
Or52b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397104,985,953 - 104,986,921 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7104,984,716 - 104,991,477 (-)EnsemblGRCm39 Ensembl
GRCm387105,336,746 - 105,337,714 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,335,509 - 105,342,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,485,260 - 112,486,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,210,567 - 105,211,535 (-)NCBIMGSCv36mm8
Celera7105,612,031 - 105,612,999 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.83NCBI
Or52b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,107,360 - 169,108,328 (-)NCBIGRCr8
mRatBN7.21159,695,507 - 159,696,475 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,694,964 - 159,701,227 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,717,169 - 167,718,137 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,903,164 - 174,904,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,790,746 - 167,791,714 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,185,494 - 170,186,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,185,494 - 170,186,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,192,985 - 177,193,953 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,080,521 - 163,081,489 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,175,997 - 163,176,966 (-)NCBI
Celera1157,631,382 - 157,632,350 (-)NCBICelera
Cytogenetic Map1q32NCBI
LOC100990509
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,607,639 - 8,608,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,571,575 - 8,572,629 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,303,065 - 6,304,472 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,985,952 - 5,986,927 (-)NCBIpanpan1.1PanPan1.1panPan2
OR52B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,504,626 - 29,505,594 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,504,626 - 29,505,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,207,019 - 29,207,987 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,331,113 - 30,332,081 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,331,113 - 30,332,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12129,652,202 - 29,653,170 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,818,140 - 29,819,108 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,012,759 - 30,013,727 (-)NCBIUU_Cfam_GSD_1.0
LOC100514118
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,488,681 - 3,489,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,487,855 - 3,490,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.294,109,693 - 4,111,568 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241629
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,651,814 - 58,654,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038156,489,327 - 156,490,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000024606   ⟹   ENSSTOP00000017876
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936842243,604 - 244,572 (-)Ensembl
RefSeq Acc Id: XM_005341089   ⟹   XP_005341146
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494756,429,310 - 56,432,640 (+)NCBI
SpeTri2.0NW_004936842243,604 - 244,849 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017876.1
GenBank Protein KAG3285866 (Get FASTA)   NCBI Sequence Viewer  
  KAG3285867 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341146   ⟸   XM_005341089
- UniProtKB: I3N0I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017876   ⟸   ENSSTOT00000024606
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021260 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024606.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC101958553 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 52B2 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3N0I0 ENTREZGENE, UniProtKB/TrEMBL