Golga1 (golgin A1) - Rat Genome Database

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Gene: Golga1 (golgin A1) Ictidomys tridecemlineatus
Analyze
Symbol: Golga1
Name: golgin A1
RGD ID: 12477760
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: golgin A1, transcript variant X1; golgin A1, transcript variant X2; golgin A1, transcript variant X3; golgin A1, transcript variant X4; golgin A1, transcript variant X5; golgin A1, transcript variant X6; golgin subfamily A member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,073,930 - 13,131,270 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,073,919 - 13,131,065 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Golga1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,073,930 - 13,131,270 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,073,919 - 13,131,065 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,878,275 - 124,948,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,878,275 - 124,948,492 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,640,554 - 127,703,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,680,449 - 126,743,178 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,720,182 - 124,782,911NCBI
Celera998,288,526 - 98,351,354 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,252,969 - 97,315,692 (-)NCBIHuRef
CHM1_19127,789,345 - 127,852,145 (-)NCBICHM1_1
T2T-CHM13v2.09137,076,588 - 137,151,003 (-)NCBIT2T-CHM13v2.0
Golga1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,906,167 - 38,955,568 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,906,167 - 38,955,553 (-)EnsemblGRCm39 Ensembl
GRCm38239,016,155 - 39,065,551 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,016,155 - 39,065,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,872,023 - 38,920,926 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,838,512 - 38,887,415 (-)NCBIMGSCv36mm8
Celera240,742,249 - 40,791,143 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Golga1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,175,400 - 43,222,319 (-)NCBIGRCr8
mRatBN7.2322,765,690 - 22,812,637 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,767,761 - 22,812,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,234,178 - 26,281,175 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,819,162 - 34,866,156 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,631,870 - 32,678,760 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,309,318 - 23,353,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,309,318 - 23,353,425 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,531,144 - 28,575,251 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,802,496 - 18,847,141 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,700,457 - 18,743,476 (-)NCBI
Celera321,201,045 - 21,245,315 (-)NCBICelera
Cytogenetic Map3q12NCBI
Golga1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,300,351 - 3,359,400 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,300,351 - 3,360,495 (+)NCBIChiLan1.0ChiLan1.0
GOLGA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,417,291 - 14,480,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,419,638 - 14,482,361 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,998,952 - 96,061,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,516,009 - 124,577,950 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,516,009 - 124,577,872 (-)Ensemblpanpan1.1panPan2
GOLGA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,091,948 - 58,140,800 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,092,050 - 58,138,737 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,290,791 - 57,339,641 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,012,388 - 59,061,247 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,012,431 - 59,061,245 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,771,400 - 57,820,253 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,087,208 - 58,135,865 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,177,919 - 58,226,790 (+)NCBIUU_Cfam_GSD_1.0
GOLGA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,652,128 - 265,705,895 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,655,175 - 265,705,907 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,480,210 - 299,531,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,204,786 - 13,267,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,204,865 - 13,267,861 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,833,196 - 2,897,220 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golga1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,258,528 - 10,321,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,258,548 - 10,321,604 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013356749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000007930   ⟹   ENSSTOP00000007097
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648713,076,019 - 13,131,270 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041542   ⟹   ENSSTOP00000028970
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648713,073,930 - 13,131,270 (-)Ensembl
RefSeq Acc Id: XM_005320958   ⟹   XP_005321015
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,131,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013356749   ⟹   XP_013212203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,131,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723532   ⟹   XP_021579207
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,042 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,130,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723533   ⟹   XP_021579208
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,412 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,130,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723534   ⟹   XP_021579209
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,131,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723535   ⟹   XP_021579210
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,360,297 (-)NCBI
SpeTri2.0NW_00493648713,073,919 - 13,128,761 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286308   ⟹   XP_040142242
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,399 (-)NCBI
RefSeq Acc Id: XM_040286309   ⟹   XP_040142243
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,109 (-)NCBI
RefSeq Acc Id: XM_040286310   ⟹   XP_040142244
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,519 (-)NCBI
RefSeq Acc Id: XM_040286311   ⟹   XP_040142245
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,323 (-)NCBI
RefSeq Acc Id: XM_040286312   ⟹   XP_040142246
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,400 (-)NCBI
RefSeq Acc Id: XM_040286313   ⟹   XP_040142247
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,412 (-)NCBI
RefSeq Acc Id: XM_040286314   ⟹   XP_040142248
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
RefSeq Acc Id: XM_040286315   ⟹   XP_040142249
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
RefSeq Acc Id: XM_040286316   ⟹   XP_040142250
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
RefSeq Acc Id: XM_040286317   ⟹   XP_040142251
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,411 (-)NCBI
RefSeq Acc Id: XM_040286318   ⟹   XP_040142252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
RefSeq Acc Id: XM_040286319   ⟹   XP_040142253
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,360,297 (-)NCBI
RefSeq Acc Id: XM_040286320   ⟹   XP_040142254
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947193,305,391 - 193,362,555 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005321015 (Get FASTA)   NCBI Sequence Viewer  
  XP_013212203 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579207 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579208 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579209 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579210 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142242 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142243 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142244 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142245 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142246 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142247 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142248 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142249 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142250 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142251 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142252 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142253 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007097.3
  ENSSTOP00000028970.1
GenBank Protein KAG3287961 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287962 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287963 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287964 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287965 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287966 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013212203   ⟸   XM_013356749
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005321015   ⟸   XM_005320958
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579209   ⟸   XM_021723534
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021579208   ⟸   XM_021723533
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579207   ⟸   XM_021723532
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579210   ⟸   XM_021723535
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040142254   ⟸   XM_040286320
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040142252   ⟸   XM_040286318
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040142250   ⟸   XM_040286316
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040142248   ⟸   XM_040286314
- Peptide Label: isoform X2
- UniProtKB: I3MAP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142249   ⟸   XM_040286315
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040142244   ⟸   XM_040286310
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142247   ⟸   XM_040286313
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142251   ⟸   XM_040286317
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040142246   ⟸   XM_040286312
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142242   ⟸   XM_040286308
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142245   ⟸   XM_040286311
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142243   ⟸   XM_040286309
- Peptide Label: isoform X1
- UniProtKB: A0A287D620 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142253   ⟸   XM_040286319
- Peptide Label: isoform X5
RefSeq Acc Id: ENSSTOP00000028970   ⟸   ENSSTOT00000041542
RefSeq Acc Id: ENSSTOP00000007097   ⟸   ENSSTOT00000007930
Protein Domains
GRIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007917 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007930.3 UniProtKB/TrEMBL
  ENSSTOT00000041542.1 UniProtKB/TrEMBL
Gene3D-CATH GRIP domain UniProtKB/TrEMBL
InterPro GRIP_dom UniProtKB/TrEMBL
NCBI Gene Golga1 ENTREZGENE
PANTHER GOLGIN SUBFAMILY A MEMBER 1 UniProtKB/TrEMBL
  GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam GRIP UniProtKB/TrEMBL
PROSITE GRIP UniProtKB/TrEMBL
SMART Grip UniProtKB/TrEMBL
UniProt A0A287D620 ENTREZGENE, UniProtKB/TrEMBL
  I3MAP3 ENTREZGENE, UniProtKB/TrEMBL