Calu (calumenin) - Rat Genome Database
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Gene: Calu (calumenin) Ictidomys tridecemlineatus
Analyze
Symbol: Calu
Name: calumenin
RGD ID: 12477124
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN peripheral nervous system axon regeneration (ortholog); response to organic cyclic compound (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); colorectal carcinoma (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Calu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7128,739,292 - 128,773,400 (+)EnsemblGRCh38hg38GRCh38
GRCh387128,739,359 - 128,773,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377128,379,346 - 128,413,477 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh377128,379,413 - 128,413,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,166,672 - 128,198,764 (+)NCBINCBI36hg18NCBI36
Build 347127,973,386 - 128,005,478NCBI
Celera7123,175,101 - 123,207,285 (+)NCBI
Cytogenetic Map7q32.1NCBI
HuRef7122,740,343 - 122,774,461 (+)NCBIHuRef
CHM1_17128,312,626 - 128,346,717 (+)NCBICHM1_1
CRA_TCAGchr7v27127,762,331 - 127,796,461 (+)NCBI
Calu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,348,105 - 29,376,674 (+)NCBIGRCm39mm39
GRCm38629,348,106 - 29,376,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,348,069 - 29,377,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,298,119 - 29,326,675 (+)NCBIGRCm37mm9NCBIm37
MGSCv36629,298,155 - 29,326,678 (+)NCBImm8
Celera629,355,300 - 29,383,863 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
Calu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2457,949,086 - 57,976,589 (+)NCBI
Rnor_6.0 Ensembl456,625,561 - 56,653,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0456,625,611 - 56,653,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0456,392,772 - 56,420,273 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,228,617 - 56,256,118 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1456,484,215 - 56,512,241 (+)NCBI
Celera453,057,097 - 53,084,601 (+)NCBICelera
Cytogenetic Map4q22NCBI
Calu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,541,568 - 9,572,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,541,574 - 9,572,189 (+)NCBIChiLan1.0ChiLan1.0
CALU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17133,215,235 - 133,247,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,223,269 - 133,247,167 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07120,691,092 - 120,723,303 (+)NCBIMhudiblu_PPA_v0panPan3
CALU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl147,872,076 - 7,925,078 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1147,869,946 - 7,899,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CALU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,841,718 - 19,884,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,911,135 - 20,945,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALU
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,338,875 - 97,370,947 (+)NCBI
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)Ensembl
Calu
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005319429   ⟹   XP_005319486
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356041   ⟹   XP_013211495
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647915,665,979 - 15,696,872 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319486 (Get FASTA)   NCBI Sequence Viewer  
  XP_013211495 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005319486   ⟸   XM_005319429
- Peptide Label: isoform X1
- UniProtKB: A0A287DCW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013211495   ⟸   XM_013356041
- Peptide Label: isoform X2
- UniProtKB: I3NHX1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022028 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000023968 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000031369 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030041 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000035388 ENTREZGENE, UniProtKB/TrEMBL
InterPro Calumenin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Calu ENTREZGENE
PANTHER PTHR10827:SF76 UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287DCW1 ENTREZGENE, UniProtKB/TrEMBL
  I3NHX1 ENTREZGENE, UniProtKB/TrEMBL