Svip (small VCP interacting protein) - Rat Genome Database

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Gene: Svip (small VCP interacting protein) Ictidomys tridecemlineatus
Analyze
Symbol: Svip
Name: small VCP interacting protein
RGD ID: 12476287
Description: ENCODES a protein that exhibits ATPase binding (inferred); INVOLVED IN negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101964419
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,467,407 - 40,473,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366543,453,043 - 3,459,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366543,452,781 - 3,459,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Svip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,467,407 - 40,473,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366543,453,043 - 3,459,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366543,452,781 - 3,459,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,818,927 - 22,829,801 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,813,799 - 22,830,299 (-)EnsemblGRCh38hg38GRCh38
GRCh371122,840,473 - 22,851,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,800,174 - 22,807,958 (-)NCBINCBI36Build 36hg18NCBI36
Celera1122,977,457 - 22,985,238 (-)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,527,002 - 22,534,781 (-)NCBIHuRef
CHM1_11122,842,910 - 22,850,689 (-)NCBICHM1_1
T2T-CHM13v2.01122,939,594 - 22,950,463 (-)NCBIT2T-CHM13v2.0
Svip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,646,909 - 51,655,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl751,646,919 - 51,655,766 (-)EnsemblGRCm39 Ensembl
GRCm38751,997,161 - 52,006,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,997,171 - 52,006,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37759,252,531 - 59,261,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera749,368,103 - 49,376,978 (-)NCBICelera
Cytogenetic Map7B4NCBI
cM Map732.91NCBI
Svip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,723,051 - 110,728,741 (-)NCBIGRCr8
mRatBN7.21101,587,128 - 101,592,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,587,128 - 101,593,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1106,995,963 - 107,001,610 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,467,855 - 115,473,502 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,771,199 - 108,776,889 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01107,368,117 - 107,373,807 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,368,117 - 107,373,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,409,749 - 108,415,439 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,803,004 - 101,808,688 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera195,753,801 - 95,759,491 (-)NCBICelera
Cytogenetic Map1q22NCBI
Svip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554763,231,789 - 3,236,602 (-)NCBIChiLan1.0ChiLan1.0
SVIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2925,105,704 - 25,114,912 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,069,811 - 25,079,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,828,321 - 22,837,536 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,726,818 - 22,744,558 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,735,361 - 22,744,558 (-)Ensemblpanpan1.1panPan2
SVIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,408,467 - 44,418,160 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,408,474 - 44,415,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2143,883,618 - 43,892,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02145,527,466 - 45,536,601 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2145,527,473 - 45,536,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12144,525,444 - 44,534,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02144,697,938 - 44,707,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02145,091,481 - 45,100,671 (-)NCBIUU_Cfam_GSD_1.0
SVIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl236,703,790 - 36,714,934 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1236,703,757 - 36,714,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2239,934,313 - 39,958,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SVIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,185,115 - 42,193,121 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,185,121 - 42,195,006 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038139,489,520 - 139,499,156 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Svip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476613,744,230 - 13,751,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476613,724,052 - 13,751,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000020331   ⟹   ENSSTOP00000019382
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366543,453,043 - 3,459,219 (-)Ensembl
RefSeq Acc Id: XM_005335967   ⟹   XP_005336024
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494740,467,413 - 40,473,548 (+)NCBI
SpeTri2.0NW_0049366543,452,781 - 3,459,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284599   ⟹   XP_040140533
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494740,467,407 - 40,472,245 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005336024 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140533 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019382.2
GenBank Protein KAG3285578 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336024   ⟸   XM_005335967
- Peptide Label: isoform X2
- UniProtKB: I3N4T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140533   ⟸   XM_040284599
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000019382   ⟸   ENSSTOT00000020331


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027870 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020331.2 UniProtKB/TrEMBL
InterPro SVIP UniProtKB/TrEMBL
NCBI Gene Svip ENTREZGENE
PANTHER PTHR35269 UniProtKB/TrEMBL
  SMALL VCP/P97-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam SVIP UniProtKB/TrEMBL
UniProt I3N4T6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Svip  small VCP interacting protein  LOC101964419  small VCP interacting protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101964419  small VCP interacting protein  Svip  small VCP interacting protein  Symbol and/or name change 5135510 APPROVED