Gabrg1 (gamma-aminobutyric acid type A receptor subunit gamma1) - Rat Genome Database

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Gene: Gabrg1 (gamma-aminobutyric acid type A receptor subunit gamma1) Ictidomys tridecemlineatus
Analyze
Symbol: Gabrg1
Name: gamma-aminobutyric acid type A receptor subunit gamma1 (Ensembl:gamma-aminobutyric acid type A receptor gamma1 subunit)
RGD ID: 12475770
Description: ENCODES a protein that exhibits GABA receptor binding (ortholog); GABA-A receptor activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); trigeminal neuralgia (ortholog); FOUND IN receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid receptor subunit gamma-1; gamma-aminobutyric acid type A receptor gamma1 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,824,202 - 33,908,100 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648212,392,248 - 12,474,056 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648212,390,328 - 12,473,904 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gabrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,824,202 - 33,908,100 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648212,392,248 - 12,474,056 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648212,390,328 - 12,473,904 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,035,769 - 46,124,054 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl446,035,769 - 46,124,054 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,037,786 - 46,126,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36445,732,543 - 45,820,839 (-)NCBINCBI36Build 36hg18NCBI36
Build 34445,878,716 - 45,967,010NCBI
Celera446,488,013 - 46,574,168 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef445,360,145 - 45,446,265 (-)NCBIHuRef
CHM1_1446,036,916 - 46,125,198 (-)NCBICHM1_1
T2T-CHM13v2.0446,004,706 - 46,090,897 (-)NCBIT2T-CHM13v2.0
Gabrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39570,906,512 - 70,999,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl570,908,390 - 70,999,960 (-)EnsemblGRCm39 Ensembl
GRCm38570,751,047 - 70,842,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl570,751,047 - 70,842,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv37571,142,286 - 71,233,856 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36571,030,182 - 71,121,752 (-)NCBIMGSCv36mm8
Celera568,018,391 - 68,111,259 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map537.43NCBI
Gabrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81437,750,292 - 37,821,651 (+)NCBIGRCr8
mRatBN7.21437,396,217 - 37,469,606 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1437,396,294 - 37,635,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1437,753,276 - 37,828,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01439,058,046 - 39,133,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01437,538,976 - 37,614,195 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01439,964,502 - 40,051,306 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,964,588 - 40,049,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01439,777,443 - 39,860,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,878,182 - 39,951,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,880,572 - 39,953,782 (+)NCBI
Celera1436,610,452 - 36,681,348 (+)NCBICelera
Cytogenetic Map14p11NCBI
Gabrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554432,276,555 - 2,347,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554432,276,592 - 2,353,312 (+)NCBIChiLan1.0ChiLan1.0
GABRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2381,746,482 - 81,833,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1482,010,545 - 82,097,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0476,034,539 - 76,121,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1486,762,932 - 86,850,033 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl486,762,417 - 86,850,033 (+)Ensemblpanpan1.1panPan2
GABRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11342,194,929 - 42,276,379 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1342,200,202 - 42,276,711 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1342,147,102 - 42,226,119 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01342,802,382 - 42,881,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1342,802,403 - 42,881,644 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11342,478,701 - 42,559,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01342,542,428 - 42,621,417 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01342,891,593 - 42,972,762 (-)NCBIUU_Cfam_GSD_1.0
GABRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl836,198,060 - 36,262,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1836,198,056 - 36,262,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2838,019,051 - 38,061,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1274,133,320 - 4,224,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl274,133,161 - 4,219,122 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604750,208,763 - 50,323,326 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476120,964,276 - 21,040,418 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476120,964,359 - 21,045,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000008604   ⟹   ENSSTOP00000007711
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648212,392,248 - 12,474,056 (-)Ensembl
RefSeq Acc Id: XM_005319963   ⟹   XP_005320020
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528533,824,202 - 33,908,100 (+)NCBI
SpeTri2.0NW_00493648212,390,328 - 12,473,904 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320020 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007711.3
Reference Protein Sequences
RefSeq Acc Id: XP_005320020   ⟸   XM_005319963
- UniProtKB: I3MBX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000007711   ⟸   ENSSTOT00000008604
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008607 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008604.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  GABBAg1_rcpt UniProtKB/TrEMBL
  GABBAg_rcpt UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
NCBI Gene Gabrg1 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT GAMMA-1 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARECEPTR UniProtKB/TrEMBL
  GABAARGAMMA UniProtKB/TrEMBL
  GABAARGAMMA1 UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt I3MBX7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-18 Gabrg1  gamma-aminobutyric acid type A receptor subunit gamma1  Gabrg1  gamma-aminobutyric acid type A receptor gamma1 subunit  Symbol and/or name change 5135510 APPROVED