Myom1 (myomesin 1) - Rat Genome Database

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Gene: Myom1 (myomesin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Myom1
Name: myomesin 1
RGD ID: 12475118
Description: ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN extraocular skeletal muscle development (ortholog); muscle contraction (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiac arrest (ortholog); chromosome 18p deletion syndrome (ortholog); FOUND IN M band (ortholog); sarcomere (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myomesin 1, transcript variant X1; myomesin 1, transcript variant X2; myomesin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494466,059,985 - 66,191,003 (-)NCBI
SpeTri2.0NW_0049366721,351,053 - 1,481,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
M band  (ISO)
sarcomere  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22513076  


Genomics

Comparative Map Data
Myom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494466,059,985 - 66,191,003 (-)NCBI
SpeTri2.0NW_0049366721,351,053 - 1,481,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl183,066,807 - 3,219,968 (-)EnsemblGRCh38hg38GRCh38
GRCh38183,066,807 - 3,220,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37183,066,805 - 3,219,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,056,805 - 3,210,106 (-)NCBINCBI36hg18NCBI36
Build 34183,056,805 - 3,210,106NCBI
Celera182,942,458 - 3,099,594 (-)NCBI
Cytogenetic Map18p11.31NCBI
HuRef183,028,045 - 3,184,538 (-)NCBIHuRef
CHM1_1183,066,174 - 3,219,476 (-)NCBICHM1_1
Myom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,326,455 - 71,433,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl1771,309,628 - 71,433,851 (+)Ensembl
GRCm381771,003,332 - 71,126,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,002,633 - 71,126,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv371771,368,897 - 71,476,196 (+)NCBIGRCm37mm9NCBIm37
MGSCv361770,924,378 - 71,031,712 (+)NCBImm8
Celera1775,288,990 - 75,395,041 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
Myom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29110,916,156 - 111,039,344 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9110,915,943 - 111,039,344 (+)Ensembl
Rnor_6.09119,353,840 - 119,469,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,353,840 - 119,468,715 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,808,061 - 118,922,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,218,668 - 110,341,029 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19110,492,862 - 110,499,352 (+)NCBI
Celera9108,050,734 - 108,169,433 (+)NCBICelera
Cytogenetic Map9q38NCBI
Myom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554027,297,502 - 7,417,583 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554027,293,415 - 7,418,226 (+)NCBIChiLan1.0ChiLan1.0
MYOM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11813,368,052 - 13,523,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1813,368,052 - 13,523,834 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01811,057,733 - 11,215,998 (+)NCBIMhudiblu_PPA_v0panPan3
MYOM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,703,057 - 69,837,987 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,703,540 - 69,857,740 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,158,406 - 69,293,346 (-)NCBI
ROS_Cfam_1.0769,764,740 - 69,899,505 (-)NCBI
UMICH_Zoey_3.1769,447,603 - 69,582,520 (-)NCBI
UNSW_CanFamBas_1.0769,467,081 - 69,602,041 (-)NCBI
UU_Cfam_GSD_1.0769,765,301 - 69,900,453 (-)NCBI
MYOM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,451,343 - 103,597,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16103,451,206 - 103,593,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2696,478,318 - 96,620,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYOM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,321,086 - 62,474,955 (-)NCBI
ChlSab1.1 Ensembl1862,320,793 - 62,465,485 (-)Ensembl
Vero_WHO_p1.0NW_02366605037,178,674 - 37,338,282 (-)NCBI
Myom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477013,239,572 - 13,356,041 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005337118   ⟹   XP_005337175
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494466,059,985 - 66,191,003 (-)NCBI
SpeTri2.0NW_0049366721,351,053 - 1,481,954 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734445   ⟹   XP_021590120
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494466,059,985 - 66,190,999 (-)NCBI
SpeTri2.0NW_0049366721,351,053 - 1,481,954 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337175 (Get FASTA)   NCBI Sequence Viewer  
  XP_021590120 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AFH78107 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294142 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294143 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337175   ⟸   XM_005337118
- Peptide Label: isoform X1
- UniProtKB: I3M6S0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590120   ⟸   XM_021734445
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005796 ENTREZGENE
Ensembl Protein ENSSTOP00000005222 ENTREZGENE
  ENSSTOP00000024434 ENTREZGENE
NCBI Gene Myom1 ENTREZGENE
UniProt I3M6S0 ENTREZGENE