Actn3 (actinin alpha 3) - Rat Genome Database

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Gene: Actn3 (actinin alpha 3) Ictidomys tridecemlineatus
Analyze
Symbol: Actn3
Name: actinin alpha 3
RGD ID: 12473994
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); focal adhesion assembly (ortholog); muscle contraction (ortholog); ASSOCIATED WITH familial temporal lobe epilepsy 8 (ortholog); intellectual disability (ortholog); FOUND IN brush border (ortholog); focal adhesion (ortholog); sarcomere (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: alpha-actinin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,591,510 - 6,604,021 (-)NCBI
SpeTri2.0NW_0049365993,033,854 - 3,046,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
brush border  (ISO)
focal adhesion  (ISO)
sarcomere  (ISO)
Z disc  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Actn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,591,510 - 6,604,021 (-)NCBI
SpeTri2.0NW_0049365993,033,854 - 3,046,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,546,395 - 66,563,334 (+)EnsemblGRCh38hg38GRCh38
GRCh381166,546,395 - 66,563,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,313,866 - 66,330,805 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,070,967 - 66,087,373 (+)NCBINCBI36hg18NCBI36
Build 341166,070,966 - 66,087,373NCBI
Celera1163,634,667 - 63,651,076 (+)NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,641,774 - 62,658,713 (+)NCBIHuRef
CHM1_11166,197,591 - 66,214,532 (+)NCBICHM1_1
Actn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,911,244 - 4,927,937 (-)NCBIGRCm39mm39
GRCm39 Ensembl194,911,244 - 4,927,937 (-)Ensembl
GRCm38194,861,216 - 4,877,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,861,216 - 4,877,909 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,861,223 - 4,877,884 (-)NCBIGRCm37mm9NCBIm37
MGSCv36194,861,223 - 4,877,884 (-)NCBImm8
Celera194,732,270 - 4,748,828 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.12NCBI
Actn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,159,081 - 202,175,012 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1202,159,082 - 202,175,012 (-)Ensembl
Rnor_6.01220,120,532 - 220,136,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,120,533 - 220,136,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,051,530 - 227,067,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,475,569 - 207,492,267 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11207,629,022 - 207,645,720 (-)NCBI
Celera1199,698,703 - 199,714,632 (-)NCBICelera
Cytogenetic Map1q43NCBI
Actn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,799,372 - 18,812,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,799,372 - 18,812,458 (-)NCBIChiLan1.0ChiLan1.0
ACTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11165,229,043 - 65,245,429 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,228,713 - 65,245,429 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01161,905,722 - 61,922,227 (+)NCBIMhudiblu_PPA_v0panPan3
ACTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,787,353 - 50,801,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,787,353 - 50,801,197 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,396,057 - 49,409,780 (-)NCBI
ROS_Cfam_1.01851,819,196 - 51,832,924 (-)NCBI
UMICH_Zoey_3.11850,920,215 - 50,933,937 (-)NCBI
UNSW_CanFamBas_1.01850,500,258 - 50,513,996 (-)NCBI
UU_Cfam_GSD_1.01851,290,188 - 51,303,909 (-)NCBI
ACTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,858,845 - 5,874,124 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,860,386 - 5,873,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,936,279 - 4,949,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,708,595 - 7,724,634 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl17,705,725 - 7,724,589 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038104,992,438 - 105,008,258 (-)NCBIVero_WHO_p1.0
Actn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,844,996 - 19,859,274 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005333375   ⟹   XP_005333432
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049476,591,510 - 6,604,021 (-)NCBI
SpeTri2.0NW_0049365993,033,854 - 3,046,364 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333432 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3284621 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005333432   ⟸   XM_005333375
- UniProtKB: I3ME63 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009751 ENTREZGENE
Ensembl Protein ENSSTOP00000008757 ENTREZGENE
NCBI Gene Actn3 ENTREZGENE
UniProt I3ME63 ENTREZGENE