Pex13 (peroxisomal biogenesis factor 13) - Rat Genome Database

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Gene: Pex13 (peroxisomal biogenesis factor 13) Ictidomys tridecemlineatus
Analyze
Symbol: Pex13
Name: peroxisomal biogenesis factor 13
RGD ID: 12473032
Description: ENCODES a protein that exhibits protein transmembrane transporter activity (inferred); INVOLVED IN cerebral cortex cell migration (ortholog); fatty acid alpha-oxidation (ortholog); locomotory behavior (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisome biogenesis factor 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,011,973 - 22,040,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,529,779 - 6,562,590 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,530,385 - 6,559,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pex13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,011,973 - 22,040,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,529,779 - 6,562,590 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,530,385 - 6,559,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,017,720 - 61,051,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,017,225 - 61,051,990 (+)EnsemblGRCh38hg38GRCh38
GRCh37261,244,855 - 61,279,125 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,098,374 - 61,129,896 (+)NCBINCBI36Build 36hg18NCBI36
Build 34261,156,520 - 61,188,042NCBI
Celera261,088,403 - 61,122,717 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef260,985,309 - 61,019,608 (+)NCBIHuRef
CHM1_1261,175,398 - 61,209,708 (+)NCBICHM1_1
T2T-CHM13v2.0261,023,561 - 61,057,833 (+)NCBIT2T-CHM13v2.0
Pex13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,597,283 - 23,615,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,596,479 - 23,615,959 (-)EnsemblGRCm39 Ensembl
GRCm381123,646,843 - 23,665,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,646,479 - 23,665,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,546,479 - 23,565,935 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,546,479 - 23,565,935 (-)NCBIMGSCv36mm8
Celera1125,768,364 - 25,787,821 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.34NCBI
Pex13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,804,673 - 101,822,367 (-)NCBIGRCr8
mRatBN7.21497,602,829 - 97,621,233 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,603,539 - 97,621,262 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,936,310 - 101,954,154 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,180,657 - 103,198,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,652,232 - 99,670,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,394,299 - 108,411,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,394,303 - 108,412,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,229,224 - 105,246,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,550,699 - 104,571,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,573,004 - 104,590,753 (-)NCBI
Celera1496,579,668 - 96,597,394 (-)NCBICelera
Cytogenetic Map14q22NCBI
Pex13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,799,568 - 22,830,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,799,568 - 22,830,718 (-)NCBIChiLan1.0ChiLan1.0
PEX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,325,084 - 65,359,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,329,035 - 65,363,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,108,970 - 61,143,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,250,887 - 62,285,163 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,250,887 - 62,285,151 (+)Ensemblpanpan1.1panPan2
PEX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,113,213 - 61,130,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,123,655 - 61,193,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,993,422 - 61,021,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,112,178 - 62,140,036 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,112,186 - 62,139,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,815,043 - 61,842,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,099,662 - 62,127,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,395,168 - 62,422,982 (+)NCBIUU_Cfam_GSD_1.0
PEX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,753,908 - 80,791,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,757,470 - 80,791,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,852,155 - 84,883,629 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,939,181 - 45,973,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,938,940 - 45,973,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,823,893 - 65,860,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833913,337 - 940,611 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833914,621 - 940,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000005870   ⟹   ENSSTOP00000005250
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364916,529,779 - 6,562,590 (+)Ensembl
RefSeq Acc Id: XM_005322040   ⟹   XP_005322097
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629222,011,973 - 22,040,921 (-)NCBI
SpeTri2.0NW_0049364916,530,385 - 6,559,706 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322097 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005250.2
GenBank Protein KAG3267280 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005322097   ⟸   XM_005322040
- UniProtKB: I3M6U3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000005250   ⟸   ENSSTOT00000005870
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005864 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005870.3 UniProtKB/TrEMBL
Gene3D-CATH SH3 Domains UniProtKB/TrEMBL
InterPro Peroxin-13_N UniProtKB/TrEMBL
  Pex13 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Pex13 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX13 UniProtKB/TrEMBL
  PTHR19332 UniProtKB/TrEMBL
Pfam Peroxin-13_N UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt I3M6U3 ENTREZGENE, UniProtKB/TrEMBL