Hoxb2 (homeobox B2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hoxb2 (homeobox B2) Ictidomys tridecemlineatus
Analyze
Symbol: Hoxb2
Name: homeobox B2
RGD ID: 12472905
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); dorsal/ventral pattern formation (ortholog); embryonic skeletal system morphogenesis (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein Hox-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,231,250 - 24,233,965 (-)NCBI
SpeTri2.0NW_00493649012,841,286 - 12,843,782 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Hoxb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,231,250 - 24,233,965 (-)NCBI
SpeTri2.0NW_00493649012,841,286 - 12,843,782 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1748,540,894 - 48,545,109 (-)EnsemblGRCh38hg38GRCh38
GRCh381748,542,655 - 48,545,109 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371746,620,017 - 46,622,471 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,975,016 - 43,977,392 (-)NCBINCBI36hg18NCBI36
Build 341743,975,019 - 43,977,391NCBI
Celera1743,074,158 - 43,076,535 (-)NCBI
Cytogenetic Map17q21.32NCBI
HuRef1741,989,338 - 41,991,636 (-)NCBIHuRef
CHM1_11746,685,958 - 46,688,334 (-)NCBICHM1_1
Hoxb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,242,458 - 96,244,846 (+)NCBIGRCm39mm39
GRCm39 Ensembl1196,241,351 - 96,244,838 (+)Ensembl
GRCm381196,351,632 - 96,354,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,350,525 - 96,354,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,212,946 - 96,215,330 (+)NCBIGRCm37mm9NCBIm37
MGSCv361196,168,891 - 96,170,106 (+)NCBImm8
Celera11106,002,498 - 106,004,882 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.85NCBI
Hoxb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21081,317,927 - 81,320,223 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1081,318,026 - 81,320,192 (+)Ensembl
Rnor_6.01084,200,859 - 84,203,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,200,880 - 84,202,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,003,524 - 84,005,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,085,425 - 85,087,617 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11085,099,760 - 85,101,981 (+)NCBI
Celera1080,084,076 - 80,086,261 (+)NCBICelera
Cytogenetic Map10q26NCBI
Hoxb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,694,868 - 12,697,846 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,693,764 - 12,697,825 (+)NCBIChiLan1.0ChiLan1.0
HOXB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,176,313 - 9,178,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,176,313 - 9,178,713 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0178,991,652 - 8,994,092 (+)NCBIMhudiblu_PPA_v0panPan3
HOXB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,803,996 - 24,810,109 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,804,426 - 24,806,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,268,266 - 24,272,531 (-)NCBI
ROS_Cfam_1.0925,598,684 - 25,602,966 (-)NCBI
UMICH_Zoey_3.1924,366,921 - 24,371,179 (-)NCBI
UNSW_CanFamBas_1.0924,627,553 - 24,631,821 (-)NCBI
UU_Cfam_GSD_1.0924,755,685 - 24,759,948 (-)NCBI
HOXB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,796,533 - 24,799,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,796,786 - 24,800,499 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,754,243 - 24,757,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HOXB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,955,651 - 68,958,422 (-)NCBI
ChlSab1.1 Ensembl1668,956,061 - 68,957,903 (-)Ensembl
Vero_WHO_p1.0NW_02366607740,010,169 - 40,012,813 (-)NCBI
Hoxb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247955,043,110 - 5,045,414 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040270512   ⟹   XP_040126446
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,231,250 - 24,233,965 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040126446 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3269173 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_040126446   ⟸   XM_040270512


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023586 ENTREZGENE
NCBI Gene Hoxb2 ENTREZGENE