Znf488 (zinc finger protein 488) - Rat Genome Database

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Gene: Znf488 (zinc finger protein 488) Ictidomys tridecemlineatus
Analyze
Symbol: Znf488
Name: zinc finger protein 488
RGD ID: 12471426
Description: INVOLVED IN negative regulation of DNA-templated transcription (ortholog); oligodendrocyte development (ortholog); positive regulation of oligodendrocyte differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721381,337,938 - 81,350,135 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365547,350,351 - 7,351,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365547,347,632 - 7,362,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf488
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721381,337,938 - 81,350,135 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365547,350,351 - 7,351,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365547,347,632 - 7,362,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF488
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381047,365,496 - 47,384,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1047,365,496 - 47,384,293 (-)EnsemblGRCh38hg38GRCh38
GRCh371048,355,069 - 48,373,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361047,975,095 - 47,993,872 (+)NCBINCBI36Build 36hg18NCBI36
Build 341047,975,094 - 47,993,870NCBI
Celera1044,779,013 - 44,797,770 (+)NCBICelera
Cytogenetic Map10q11.22NCBI
HuRef1043,107,591 - 43,126,347 (+)NCBIHuRef
CHM1_11048,520,142 - 48,538,914 (+)NCBICHM1_1
T2T-CHM13v2.01048,256,793 - 48,275,590 (-)NCBIT2T-CHM13v2.0
Zfp488
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391433,689,023 - 33,700,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1433,689,027 - 33,700,721 (-)EnsemblGRCm39 Ensembl
GRCm381433,967,070 - 33,979,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1433,967,070 - 33,978,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv371434,780,256 - 34,791,950 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361432,796,162 - 32,807,856 (-)NCBIMGSCv36mm8
Celera1430,233,294 - 30,246,477 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.8NCBI
Zfp488
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,289,286 - 9,299,928 (-)NCBIGRCr8
mRatBN7.2169,283,039 - 9,293,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,283,043 - 9,293,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,302,496 - 9,313,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,447,207 - 10,457,866 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,297,567 - 9,308,224 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,292,964 - 10,304,794 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,294,931 - 10,296,341 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0168,613,607 - 8,625,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,599,510 - 9,600,526 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1169,599,507 - 9,614,045 (-)NCBI
Celera165,916,539 - 5,928,369 (+)NCBICelera
Cytogenetic Map16p16-p15NCBI
Znf488
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555562,227,805 - 2,237,874 (-)NCBIChiLan1.0ChiLan1.0
ZNF488
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2859,929,326 - 59,944,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11059,934,638 - 59,947,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01046,565,330 - 46,584,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZNF488
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,916,782 - 34,966,706 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,899,635 - 34,966,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,917,453 - 34,930,808 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0435,313,639 - 35,326,951 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl435,275,570 - 35,326,953 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1435,145,417 - 35,158,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0435,326,560 - 35,339,844 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,834,149 - 35,847,468 (+)NCBIUU_Cfam_GSD_1.0
ZNF488
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1488,474,122 - 88,487,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11488,474,122 - 88,526,333 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21496,135,789 - 96,151,008 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF488
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,131,989 - 44,149,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660483,903,989 - 3,922,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015146   ⟹   ENSSTOP00000013568
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365547,350,351 - 7,351,360 (-)Ensembl
RefSeq Acc Id: XM_021729077   ⟹   XP_021584752
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721381,337,938 - 81,349,949 (-)NCBI
SpeTri2.0NW_0049365547,347,632 - 7,359,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729078   ⟹   XP_021584753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721381,337,938 - 81,349,950 (-)NCBI
SpeTri2.0NW_0049365547,347,632 - 7,359,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729079   ⟹   XP_021584754
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721381,337,938 - 81,349,916 (-)NCBI
SpeTri2.0NW_0049365547,347,632 - 7,359,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729080   ⟹   XP_021584755
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721381,337,938 - 81,350,135 (-)NCBI
SpeTri2.0NW_0049365547,347,632 - 7,362,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040271958   ⟹   XP_040127892
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721381,337,938 - 81,349,909 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021584755   ⟸   XM_021729080
- UniProtKB: I3MP80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584753   ⟸   XM_021729078
- UniProtKB: I3MP80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584752   ⟸   XM_021729077
- UniProtKB: I3MP80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584754   ⟸   XM_021729079
- UniProtKB: I3MP80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040127892   ⟸   XM_040271958
- UniProtKB: I3MP80 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000013568   ⟸   ENSSTOT00000015146
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015147 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015146.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf488 ENTREZGENE
PANTHER AGAP007109-PA UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 488 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3MP80 ENTREZGENE, UniProtKB/TrEMBL