Tigd7 (tigger transposable element derived 7)

Gene: Tigd7 (tigger transposable element derived 7) Ictidomys tridecemlineatus

Analyze

Symbol:

Tigd7

Name:

tigger transposable element derived 7

RGD ID:

12470476

Description:

ENCODES a protein that exhibits hydrolase activity, acting on glycosyl bonds (ortholog); NAD+-protein-arginine ADP-ribosyltransferase activity (ortholog); INVOLVED IN NAD catabolic process (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); idiopathic generalized epilepsy (ortholog); FOUND IN external side of plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tigger transposable element derived 7, transcript variant X1; tigger transposable element derived 7, transcript variant X2; tigger transposable element derived 7, transcript variant X3; tigger transposable element-derived protein 7

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,766,112 - 105,771,859 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	941,533 - 943,182 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	938,233 - 943,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

genetic disease (ISO)

idiopathic generalized epilepsy (ISO)

Rubinstein-Taybi syndrome (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

NAD catabolic process (ISO)

Cellular Component

external side of plasma membrane (ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

hydrolase activity, acting on glycosyl bonds (ISO)

NAD+-protein-arginine ADP-ribosyltransferase activity (ISO)

nucleic acid binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Tigd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,766,112 - 105,771,859 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	941,533 - 943,182 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	938,233 - 943,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TIGD7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	3,298,808 - 3,305,430 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	3,298,808 - 3,305,729 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	3,348,808 - 3,355,430 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	3,288,833 - 3,291,401 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	3,288,832 - 3,291,401	NCBI
Celera	16	3,554,494 - 3,557,062 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	3,318,459 - 3,325,090 (-)	NCBI		HuRef
CHM1_1	16	3,348,746 - 3,355,377 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	3,325,858 - 3,332,480 (-)	NCBI		T2T-CHM13v2.0

Art2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	101,224,936 - 101,234,790 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	101,226,177 - 101,234,807 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	101,575,729 - 101,585,591 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	101,576,970 - 101,585,600 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	108,727,374 - 108,729,675 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	91,402,235 - 91,404,539 (-)	NCBI		MGSCv36	mm8
MGSCv36	7	101,452,681 - 101,454,982 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	7	E2	NCBI
cM Map	7	54.61	NCBI

TIGD7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	3,832,735 - 3,834,514 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	7,617,523 - 7,619,305 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	2,229,601 - 2,236,195 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	3,407,922 - 3,414,514 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	3,408,055 - 3,409,704 (-)	Ensembl	panpan1.1		panPan2

TIGD7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	37,931,461 - 37,937,102 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	37,934,889 - 37,936,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	6	38,091,001 - 38,248,777 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	38,243,540 - 38,248,763 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	37,873,776 - 37,934,861 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	37,846,224 - 37,907,395 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	38,377,455 - 38,382,933 (+)	NCBI		UU_Cfam_GSD_1.0

TIGD7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	3,022,294 - 3,029,167 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	27,795,326 - 27,802,242 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005337751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040277079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013118 ⟹ ENSSTOP00000011759

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936694	941,533 - 943,182 (+)	Ensembl

RefSeq Acc Id:

XM_005337751 ⟹ XP_005337808

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	105,766,112 - 105,771,219 (-)	NCBI
SpeTri2.0	NW_004936694	938,233 - 943,347 (+)	NCBI

Sequence:

show sequence

CGCGCCCGCGCGCCCGCGCTCACGGCGCTCGGGAGGGGCGGCTGCCTGCCCTGTGGCACGGGGA
ACTGTCGACGCTTCCGAACCGACAGGGTCCCGAGCCCTCAGGGCCCGCCCTCGCCGCCCTGCCT
GGCACGCATGCCCCGGCCGTCGCTGAGGGCTCCTGGAGAGCAGGCAGCTCCTGCAGCACCTGGA
GTGGATACAAGTGGCAGTTTTTGTTTCTTATGAAATTGTTTCTGGAATGGAAACCATGGAATTA
GAGTAGAACATTTCTCAAGACCTGCAATGGCTTTGGGCAGCACCAGGAGCTCCTGAAAGGATTA
TCTGAGAGTATATAAAAGTTTGGCAACAGAAGGAACTATGAGAAACAACTGATCAGAAATACCA
TTAGAGCAATCTTTTGAATTCTTCAGACAATTGATTCTTGGTGCAAATTAAGTAAAATCTATAC
TGAAGAGAAATATGAAAAGTATGTTGACATCCTAAAGTAAACAGGAAAAAAAGTGAAATGATAG
ACTTTTTTTTTTTTTTAACTATGGTTAAGTATTTGTAAAACTTCAGATTTAGCTCTGAGAATTT
CCATGATTCTGAAGCTTGATATCCCAAATGTGGAACCTTTTCAATGAAAAAGAATAATTGAGAA
TACATCTTATATACCCAAGAAAGAAGACCTGAGAGTGAAAAAGTGCTACAAACAAATTGTTTAC
ATATAATCTTGGCAACAAAATTCACACTCAGGTTAAAGCTGAGTTTGAGACTGCTATATTGAAT
ACAGTAAAGATTGAATTTCATTCAGATGTGCAACAGAACCTACTGATTTTTCTTCACTTAGAAA
TTCTATATAAATGTCCCCAAGCTCTAGCTCTTCAGGTGTTCCAGTGTCAGGGTCCTTGAGGCTT
GGGGTCTATACAGGTAGATGAACTGTTGCCCAGTGAAGGCTTCATACAGAGCAACATGAGCACA
GTTTTCTGTTCCAGCAGTGAGGTAAAACCAGGTCATTTTGGAAGAAGCCATACTGCATCTCTGC
TATACAAGATAACCCTGTCATTACCTTTGAGTTTTTCATACTCCTTTCTCAAGCATCAACTTTG
TATTACAGATTTAATCCACCTGGTTCTGTTCTTATGAGCACATGTCTCTCAATGCCTCTACTCT
TCATTTTGTCCCTTTTCCTCTTAGAGAATTAGAGAATATATGCAGGTACCCCTATCAGGGAGAG
AAAACAATGTGGTTCCAAAAACCTATTTCCTGTGTCTTTGGTAGTGGCAATTTTGAGAGTATGT
AAGACTGACACTTCAATCATGAGCCCTTATTCCTTTCAGCCCATTACCCTCCAATACAAATGCC
GCAACCTTCCAGGACTCTCCACTAGCTTTTTGTTATTTTAAAATGTTTTTCCCAATTCAGTAAA
CTATTTCCCTTTTATTTTTTTGGCTGTTTGAAATCAAAATCACTATGAATAAGAGAGGGAAATA
TACAACATTGAATTTGGAGGAAAAAATGAAGGTTCTCAGCAGGATTGAAGCTGGACGATCTCTT
AAAAATGTAATGGATGAATTTGGAATCAGTAAGTCAACATTTTATGACATTAAAAAGAATAAGA
AATTGATTTTGGATTTTGTACTGAAACAGGACATGCCATTAGTAGGAGCTGAAAAGAGAAAGAG
GACAACAGGAGCTAAATATAGTGATGTAGATGATGCTGTATACATGTGGTACCAACAGAAACGC
TCAGCTGGTGTCCCTGTTAGAGGCGTGGAGCTTCAGGCTGCTGCAGAGAGATTTGCACAATGTT
TTGGACGAACAGACTTCAAAGCCAGCACTGGTTGGCTTTTTAGATTTCGAAATAGGCATGCAAT
TGGGAACCGAAAAGTATGTGGAGAACAGATTGTAAGTTCAGCTTCAGAAAATGTTGAGCCATTT
AGACAAAAACTGTCCTTGATAATCAAAGAGGAGAAACTGCATCTAGCTCAGGTATACAGTGGGG
ATGAGACTGACCTCTTTTGGAAGTCAATGCCAGAAAACACTCAGGCAAGTAGAAAAGATATCTG
CCTGCCAGGGAGGAAAATAAACAAAGAACGGTTGTCTGCCCTTTTATGTGCAAATGCAGATGGA
ACTCATAAGTTAAAATCAATTATTATTGGCAAATTAAAGCTGCCCAAAAGTGTGAGAGAGGACA
CAAGTTCATTACCTGTGATATATAAACCTAGTAAAGATGCTTGGTTCACCAGGGAATTGTTTTC
AGAATGGTTCTTTCAAAACTTTGTTCCTGAGGTTCGGCATTTTCAAATTAATGTCCTAAGATTC
CATGAAGAGGATGTCAGGGCATTGTTACTTCTGGACAGTTCCCCAGCTCACCCTTCTGCTGAAT
CACTAACCAGTGAGGATGGTCGAATAAAATGTATGTTCTTTCCTCATAACTCTTCAACTTTGAT
CCAACCAATGAATCAGGGTGTGACCTTGAGCTGCAAACGACTTTATAGATGGAAGCAACTTGAA
GAGAGTCTGGTAATTTTTGAAGAAAGTGAAGATGAGCAAGATAAAGGGGAAAACGGGATTTCCA
AGATTAAAATCTATAATATAAAAAATGCAGTTTTTAACTGGGCAAGAAGTTGGGATGAAGTAAA
GCAAATAACCATAGTAAATGCCTGGGAAAATCTTCTTTACAAAAAGGAACCTGACTATGCTCTC
CAAGGCTTAGAAAGTAGAGATTACAGAGAGATTCTTGAAAAATGTGGTGAGTTAAAAACTAAGG
TAGATGATGATAAGGTGTGGTTAAATGGAGTTGATGAAGAAAAGGGTTGTCCTCCAAAAACTAA
AGGTAGAATTACAAAGGGAGTTGCCCAAAGAGAAGGAATTGAGAAGCAGGCTACTGAATTTAAG
TTATCTGCTGTGAGAGAGAGTTTGGACTACCTTCTTGACTTTGTGGATGCCACACCTGAATTTC
AAAGGTTTCATTCCACACTGAAAGAGATGCAACAAGAAGTAGTCAGGAAACAGTTCCAGAGTAG
AATCCATTCAAGAATTGGTAGTTTTTTGACACCTAGGCCTCATAATATTAAGGATACCTTTAAT
ATGCCCTCAACTTCTGGTTCTAATCATTAAATTTTTGTGTTTAAAGATTTCTGCAGTTACATGA
TCATGTTTGATGTAAGCCTACTGTAATTGTCATTGTTTTTATTAACTGACATTATTTTGCATAT
CAGTGTTCATTTACATATTGGTTATAAACTATACAGTTTGAAAATAATAAACTTTCGTTTCTTT
AAA

hide sequence

RefSeq Acc Id:

XM_013364021 ⟹ XP_013219475

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	105,766,112 - 105,771,219 (-)	NCBI
SpeTri2.0	NW_004936694	938,233 - 943,347 (+)	NCBI

Sequence:

show sequence

CGCGCCCGCGCGCCCGCGCTCACGGCGCTCGGGAGGGGCGGCTGCCTGCCCTGTGGCACGGGGA
ACTGTCGACGCTTCCGAACCGACAGGGTCCCGAGCCCTCAGGGCCCGCCCTCGCCGCCCTGCCT
GGCACGCATGCCCCGGCCGTCGCTGAGGGCTCCTGGAGAGCAGGCAGCTCCTGCAGGGCTCTGG
GCCTTTGGTCTGGTCCTGGCAGTGCCGGAGCTCTGCACTAGACAGAATCGCGCGGGAGGTTCCC
CAGCGTTCACAGTGTCAGCCTGTGCCAGTCAGAGGTTGCCTGCTCGGTGAACTGTGTGCAGCCG
GCGATGGAGTCCGCGAGAAACCCGGAGGGCCGAAGCAACTTCAGCAACATCACTAGTGAGAACT
CCAAGGAGCACCTGGAGTGGATACAAGTGGCAGTTTTTGTTTCTTATGAAATTGTTTCTGGAAT
GGAAACCATGGAATTAGAGTAGAACATTTCTCAAGACCTGCAATGGCTTTGGGCAGCACCAGGA
GCTCCTGAAAGGATTATCTGAGAGTATATAAAAGTTTGGCAACAGAAGGAACTATGAGAAACAA
CTGATCAGAAATACCATTAGAGCAATCTTTTGAATTCTTCAGACAATTGATTCTTGGTGCAAAT
TAAGTAAAATCTATACTGAAGAGAAATATGAAAAGTATGTTGACATCCTAAAGTAAACAGGAAA
AAAAGTGAAATGATAGACTTTTTTTTTTTTTTAACTATGGTTAAGTATTTGTAAAACTTCAGAT
TTAGCTCTGAGAATTTCCATGATTCTGAAGCTTGATATCCCAAATGTGGAACCTTTTCAATGAA
AAAGAATAATTGAGAATACATCTTATATACCCAAGAAAGAAGACCTGAGAGTGAAAAAGTGCTA
CAAACAAATTGTTTACATATAATCTTGGCAACAAAATTCACACTCAGGTTAAAGCTGAGTTTGA
GACTGCTATATTGAATACAGTAAAGATTGAATTTCATTCAGATGTGCAACAGAACCTACTGATT
TTTCTTCACTTAGAAATTCTATATAAATGTCCCCAAGCTCTAGCTCTTCAGGTGTTCCAGTGTC
AGGGTCCTTGAGGCTTGGGGTCTATACAGGTAGATGAACTGTTGCCCAGTGAAGGCTTCATACA
GAGCAACATGAGCACAGTTTTCTGTTCCAGCAGTGAGGTAAAACCAGGTCATTTTGGAAGAAGC
CATACTGCATCTCTGCTATACAAGATAACCCTGTCATTACCTTTGAGTTTTTCATACTCCTTTC
TCAAGCATCAACTTTGTATTACAGATTTAATCCACCTGGTTCTGTTCTTATGAGCACATGTCTC
TCAATGCCTCTACTCTTCATTTTGTCCCTTTTCCTCTTAGAGAATTAGAGAATATATGCAGGTA
CCCCTATCAGGGAGAGAAAACAATGTGGTTCCAAAAACCTATTTCCTGTGTCTTTGGTAGTGGC
AATTTTGAGAGTATGTAAGACTGACACTTCAATCATGAGCCCTTATTCCTTTCAGCCCATTACC
CTCCAATACAAATGCCGCAACCTTCCAGGACTCTCCACTAGCTTTTTGTTATTTTAAAATGTTT
TTCCCAATTCAGTAAACTATTTCCCTTTTATTTTTTTGGCTGTTTGAAATCAAAATCACTATGA
ATAAGAGAGGGAAATATACAACATTGAATTTGGAGGAAAAAATGAAGGTTCTCAGCAGGATTGA
AGCTGGACGATCTCTTAAAAATGTAATGGATGAATTTGGAATCAGTAAGTCAACATTTTATGAC
ATTAAAAAGAATAAGAAATTGATTTTGGATTTTGTACTGAAACAGGACATGCCATTAGTAGGAG
CTGAAAAGAGAAAGAGGACAACAGGAGCTAAATATAGTGATGTAGATGATGCTGTATACATGTG
GTACCAACAGAAACGCTCAGCTGGTGTCCCTGTTAGAGGCGTGGAGCTTCAGGCTGCTGCAGAG
AGATTTGCACAATGTTTTGGACGAACAGACTTCAAAGCCAGCACTGGTTGGCTTTTTAGATTTC
GAAATAGGCATGCAATTGGGAACCGAAAAGTATGTGGAGAACAGATTGTAAGTTCAGCTTCAGA
AAATGTTGAGCCATTTAGACAAAAACTGTCCTTGATAATCAAAGAGGAGAAACTGCATCTAGCT
CAGGTATACAGTGGGGATGAGACTGACCTCTTTTGGAAGTCAATGCCAGAAAACACTCAGGCAA
GTAGAAAAGATATCTGCCTGCCAGGGAGGAAAATAAACAAAGAACGGTTGTCTGCCCTTTTATG
TGCAAATGCAGATGGAACTCATAAGTTAAAATCAATTATTATTGGCAAATTAAAGCTGCCCAAA
AGTGTGAGAGAGGACACAAGTTCATTACCTGTGATATATAAACCTAGTAAAGATGCTTGGTTCA
CCAGGGAATTGTTTTCAGAATGGTTCTTTCAAAACTTTGTTCCTGAGGTTCGGCATTTTCAAAT
TAATGTCCTAAGATTCCATGAAGAGGATGTCAGGGCATTGTTACTTCTGGACAGTTCCCCAGCT
CACCCTTCTGCTGAATCACTAACCAGTGAGGATGGTCGAATAAAATGTATGTTCTTTCCTCATA
ACTCTTCAACTTTGATCCAACCAATGAATCAGGGTGTGACCTTGAGCTGCAAACGACTTTATAG
ATGGAAGCAACTTGAAGAGAGTCTGGTAATTTTTGAAGAAAGTGAAGATGAGCAAGATAAAGGG
GAAAACGGGATTTCCAAGATTAAAATCTATAATATAAAAAATGCAGTTTTTAACTGGGCAAGAA
GTTGGGATGAAGTAAAGCAAATAACCATAGTAAATGCCTGGGAAAATCTTCTTTACAAAAAGGA
ACCTGACTATGCTCTCCAAGGCTTAGAAAGTAGAGATTACAGAGAGATTCTTGAAAAATGTGGT
GAGTTAAAAACTAAGGTAGATGATGATAAGGTGTGGTTAAATGGAGTTGATGAAGAAAAGGGTT
GTCCTCCAAAAACTAAAGGTAGAATTACAAAGGGAGTTGCCCAAAGAGAAGGAATTGAGAAGCA
GGCTACTGAATTTAAGTTATCTGCTGTGAGAGAGAGTTTGGACTACCTTCTTGACTTTGTGGAT
GCCACACCTGAATTTCAAAGGTTTCATTCCACACTGAAAGAGATGCAACAAGAAGTAGTCAGGA
AACAGTTCCAGAGTAGAATCCATTCAAGAATTGGTAGTTTTTTGACACCTAGGCCTCATAATAT
TAAGGATACCTTTAATATGCCCTCAACTTCTGGTTCTAATCATTAAATTTTTGTGTTTAAAGAT
TTCTGCAGTTACATGATCATGTTTGATGTAAGCCTACTGTAATTGTCATTGTTTTTATTAACTG
ACATTATTTTGCATATCAGTGTTCATTTACATATTGGTTATAAACTATACAGTTTGAAAATAAT
AAACTTTCGTTTCTTTAAA

hide sequence

RefSeq Acc Id:

XM_021734884 ⟹ XP_021590559

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	105,766,112 - 105,771,040 (-)	NCBI
SpeTri2.0	NW_004936694	938,423 - 943,347 (+)	NCBI

Sequence:

show sequence

CCGGGCGCACCCCACGTGTCCGCAAGGCTTTCTGGAAGGGCCGTGCGGCGCCTGCCCCGCGGCT
GGGGGCGCTGTTTGCTCGTGAGGCAGGTAGCTCCGGCTCCGCGGGCCTCCGGGCTCTGCCGCTC
CCCGCAGCTTGCCTCCCCACAGCTTGCCTCCCCGCAGGGCTCTGGGCCTTTGGTCTGGTCCTGG
CAGTGCCGGAGCTCTGCACTAGACAGAATCGCGCGGGAGGTTCCCCAGCGTTCACAGTGTCAGC
CTGTGCCAGTCAGAGGTTGCCTGCTCGGTGAACTGTGTGCAGCCGGCGATGGAGTCCGCGAGAA
ACCCGGAGGGCCGAAGCAACTTCAGCAACATCACTAGTGAGAACTCCAAGGAGCACCTGGAGTG
GATACAAGTGGCAGTTTTTGTTTCTTATGAAATTGTTTCTGGAATGGAAACCATGGAATTAGAG
TAGAACATTTCTCAAGACCTGCAATGGCTTTGGGCAGCACCAGGAGCTCCTGAAAGGATTATCT
GAGAGTATATAAAAGTTTGGCAACAGAAGGAACTATGAGAAACAACTGATCAGAAATACCATTA
GAGCAATCTTTTGAATTCTTCAGACAATTGATTCTTGGTGCAAATTAAGTAAAATCTATACTGA
AGAGAAATATGAAAAGTATGTTGACATCCTAAAGTAAACAGGAAAAAAAGTGAAATGATAGACT
TTTTTTTTTTTTTAACTATGGTTAAGTATTTGTAAAACTTCAGATTTAGCTCTGAGAATTTCCA
TGATTCTGAAGCTTGATATCCCAAATGTGGAACCTTTTCAATGAAAAAGAATAATTGAGAATAC
ATCTTATATACCCAAGAAAGAAGACCTGAGAGTGAAAAAGTGCTACAAACAAATTGTTTACATA
TAATCTTGGCAACAAAATTCACACTCAGGTTAAAGCTGAGTTTGAGACTGCTATATTGAATACA
GTAAAGATTGAATTTCATTCAGATGTGCAACAGAACCTACTGATTTTTCTTCACTTAGAAATTC
TATATAAATGTCCCCAAGCTCTAGCTCTTCAGGTGTTCCAGTGTCAGGGTCCTTGAGGCTTGGG
GTCTATACAGGTAGATGAACTGTTGCCCAGTGAAGGCTTCATACAGAGCAACATGAGCACAGTT
TTCTGTTCCAGCAGTGAGGTAAAACCAGGTCATTTTGGAAGAAGCCATACTGCATCTCTGCTAT
ACAAGATAACCCTGTCATTACCTTTGAGTTTTTCATACTCCTTTCTCAAGCATCAACTTTGTAT
TACAGATTTAATCCACCTGGTTCTGTTCTTATGAGCACATGTCTCTCAATGCCTCTACTCTTCA
TTTTGTCCCTTTTCCTCTTAGAGAATTAGAGAATATATGCAGGTACCCCTATCAGGGAGAGAAA
ACAATGTGGTTCCAAAAACCTATTTCCTGTGTCTTTGGTAGTGGCAATTTTGAGAGTATGTAAG
ACTGACACTTCAATCATGAGCCCTTATTCCTTTCAGCCCATTACCCTCCAATACAAATGCCGCA
ACCTTCCAGGACTCTCCACTAGCTTTTTGTTATTTTAAAATGTTTTTCCCAATTCAGTAAACTA
TTTCCCTTTTATTTTTTTGGCTGTTTGAAATCAAAATCACTATGAATAAGAGAGGGAAATATAC
AACATTGAATTTGGAGGAAAAAATGAAGGTTCTCAGCAGGATTGAAGCTGGACGATCTCTTAAA
AATGTAATGGATGAATTTGGAATCAGTAAGTCAACATTTTATGACATTAAAAAGAATAAGAAAT
TGATTTTGGATTTTGTACTGAAACAGGACATGCCATTAGTAGGAGCTGAAAAGAGAAAGAGGAC
AACAGGAGCTAAATATAGTGATGTAGATGATGCTGTATACATGTGGTACCAACAGAAACGCTCA
GCTGGTGTCCCTGTTAGAGGCGTGGAGCTTCAGGCTGCTGCAGAGAGATTTGCACAATGTTTTG
GACGAACAGACTTCAAAGCCAGCACTGGTTGGCTTTTTAGATTTCGAAATAGGCATGCAATTGG
GAACCGAAAAGTATGTGGAGAACAGATTGTAAGTTCAGCTTCAGAAAATGTTGAGCCATTTAGA
CAAAAACTGTCCTTGATAATCAAAGAGGAGAAACTGCATCTAGCTCAGGTATACAGTGGGGATG
AGACTGACCTCTTTTGGAAGTCAATGCCAGAAAACACTCAGGCAAGTAGAAAAGATATCTGCCT
GCCAGGGAGGAAAATAAACAAAGAACGGTTGTCTGCCCTTTTATGTGCAAATGCAGATGGAACT
CATAAGTTAAAATCAATTATTATTGGCAAATTAAAGCTGCCCAAAAGTGTGAGAGAGGACACAA
GTTCATTACCTGTGATATATAAACCTAGTAAAGATGCTTGGTTCACCAGGGAATTGTTTTCAGA
ATGGTTCTTTCAAAACTTTGTTCCTGAGGTTCGGCATTTTCAAATTAATGTCCTAAGATTCCAT
GAAGAGGATGTCAGGGCATTGTTACTTCTGGACAGTTCCCCAGCTCACCCTTCTGCTGAATCAC
TAACCAGTGAGGATGGTCGAATAAAATGTATGTTCTTTCCTCATAACTCTTCAACTTTGATCCA
ACCAATGAATCAGGGTGTGACCTTGAGCTGCAAACGACTTTATAGATGGAAGCAACTTGAAGAG
AGTCTGGTAATTTTTGAAGAAAGTGAAGATGAGCAAGATAAAGGGGAAAACGGGATTTCCAAGA
TTAAAATCTATAATATAAAAAATGCAGTTTTTAACTGGGCAAGAAGTTGGGATGAAGTAAAGCA
AATAACCATAGTAAATGCCTGGGAAAATCTTCTTTACAAAAAGGAACCTGACTATGCTCTCCAA
GGCTTAGAAAGTAGAGATTACAGAGAGATTCTTGAAAAATGTGGTGAGTTAAAAACTAAGGTAG
ATGATGATAAGGTGTGGTTAAATGGAGTTGATGAAGAAAAGGGTTGTCCTCCAAAAACTAAAGG
TAGAATTACAAAGGGAGTTGCCCAAAGAGAAGGAATTGAGAAGCAGGCTACTGAATTTAAGTTA
TCTGCTGTGAGAGAGAGTTTGGACTACCTTCTTGACTTTGTGGATGCCACACCTGAATTTCAAA
GGTTTCATTCCACACTGAAAGAGATGCAACAAGAAGTAGTCAGGAAACAGTTCCAGAGTAGAAT
CCATTCAAGAATTGGTAGTTTTTTGACACCTAGGCCTCATAATATTAAGGATACCTTTAATATG
CCCTCAACTTCTGGTTCTAATCATTAAATTTTTGTGTTTAAAGATTTCTGCAGTTACATGATCA
TGTTTGATGTAAGCCTACTGTAATTGTCATTGTTTTTATTAACTGACATTATTTTGCATATCAG
TGTTCATTTACATATTGGTTATAAACTATACAGTTTGAAAATAATAAACTTTCGTTTCTTTAAA

hide sequence

RefSeq Acc Id:

XM_040277079 ⟹ XP_040133013

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	105,767,927 - 105,771,859 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005337808	(Get FASTA)	NCBI Sequence Viewer
	XP_013219475	(Get FASTA)	NCBI Sequence Viewer
	XP_021590559	(Get FASTA)	NCBI Sequence Viewer
	XP_040133013	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011759.1
GenBank Protein	KAG3259078	(Get FASTA)	NCBI Sequence Viewer
	KAG3259079	(Get FASTA)	NCBI Sequence Viewer
	KAG3259080	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005337808 ⟸ XM_005337751
- Peptide Label:	isoform X1
- UniProtKB:	I3MKF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNKRGKYTTLNLEEKMKVLSRIEAGRSLKNVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLV GAEKRKRTTGAKYSDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFAQCFGRTDFKASTGWLFR FRNRHAIGNRKVCGEQIVSSASENVEPFRQKLSLIIKEEKLHLAQVYSGDETDLFWKSMPENTQ ASRKDICLPGRKINKERLSALLCANADGTHKLKSIIIGKLKLPKSVREDTSSLPVIYKPSKDAW FTRELFSEWFFQNFVPEVRHFQINVLRFHEEDVRALLLLDSSPAHPSAESLTSEDGRIKCMFFP HNSSTLIQPMNQGVTLSCKRLYRWKQLEESLVIFEESEDEQDKGENGISKIKIYNIKNAVFNWA RSWDEVKQITIVNAWENLLYKKEPDYALQGLESRDYREILEKCGELKTKVDDDKVWLNGVDEEK GCPPKTKGRITKGVAQREGIEKQATEFKLSAVRESLDYLLDFVDATPEFQRFHSTLKEMQQEVV RKQFQSRIHSRIGSFLTPRPHNIKDTFNMPSTSGSNH hide sequence

RefSeq Acc Id:	XP_013219475 ⟸ XM_013364021
- Peptide Label:	isoform X1
- UniProtKB:	I3MKF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNKRGKYTTLNLEEKMKVLSRIEAGRSLKNVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLV GAEKRKRTTGAKYSDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFAQCFGRTDFKASTGWLFR FRNRHAIGNRKVCGEQIVSSASENVEPFRQKLSLIIKEEKLHLAQVYSGDETDLFWKSMPENTQ ASRKDICLPGRKINKERLSALLCANADGTHKLKSIIIGKLKLPKSVREDTSSLPVIYKPSKDAW FTRELFSEWFFQNFVPEVRHFQINVLRFHEEDVRALLLLDSSPAHPSAESLTSEDGRIKCMFFP HNSSTLIQPMNQGVTLSCKRLYRWKQLEESLVIFEESEDEQDKGENGISKIKIYNIKNAVFNWA RSWDEVKQITIVNAWENLLYKKEPDYALQGLESRDYREILEKCGELKTKVDDDKVWLNGVDEEK GCPPKTKGRITKGVAQREGIEKQATEFKLSAVRESLDYLLDFVDATPEFQRFHSTLKEMQQEVV RKQFQSRIHSRIGSFLTPRPHNIKDTFNMPSTSGSNH hide sequence

RefSeq Acc Id:	XP_021590559 ⟸ XM_021734884
- Peptide Label:	isoform X1
- UniProtKB:	I3MKF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNKRGKYTTLNLEEKMKVLSRIEAGRSLKNVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLV GAEKRKRTTGAKYSDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFAQCFGRTDFKASTGWLFR FRNRHAIGNRKVCGEQIVSSASENVEPFRQKLSLIIKEEKLHLAQVYSGDETDLFWKSMPENTQ ASRKDICLPGRKINKERLSALLCANADGTHKLKSIIIGKLKLPKSVREDTSSLPVIYKPSKDAW FTRELFSEWFFQNFVPEVRHFQINVLRFHEEDVRALLLLDSSPAHPSAESLTSEDGRIKCMFFP HNSSTLIQPMNQGVTLSCKRLYRWKQLEESLVIFEESEDEQDKGENGISKIKIYNIKNAVFNWA RSWDEVKQITIVNAWENLLYKKEPDYALQGLESRDYREILEKCGELKTKVDDDKVWLNGVDEEK GCPPKTKGRITKGVAQREGIEKQATEFKLSAVRESLDYLLDFVDATPEFQRFHSTLKEMQQEVV RKQFQSRIHSRIGSFLTPRPHNIKDTFNMPSTSGSNH hide sequence

RefSeq Acc Id:	XP_040133013 ⟸ XM_040277079
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000011759 ⟸ ENSSTOT00000013118

Protein Domains

HTH CENPB-type HTH psq-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013125	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013118.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	DDE_SF_endonuclease_dom	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	HTH_CenpB_DNA-bd_dom	UniProtKB/TrEMBL
	HTH_Psq	UniProtKB/TrEMBL
NCBI Gene	Tigd7	ENTREZGENE
PANTHER	TIGGER TRANSPOSABLE ELEMENT-DERIVED PROTEIN 7	UniProtKB/TrEMBL
	TRANSPOSON	UniProtKB/TrEMBL
Pfam	CENP-B_N	UniProtKB/TrEMBL
	DDE_1	UniProtKB/TrEMBL
	HTH_Tnp_Tc5	UniProtKB/TrEMBL
PROSITE	HTH_CENPB	UniProtKB/TrEMBL
	HTH_PSQ	UniProtKB/TrEMBL
SMART	CENPB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	I3MKF1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar