Shf (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024408640 | 90,033,406 - 90,053,526 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936471 | 7,879,141 - 7,901,589 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936471 | 7,881,484 - 7,901,583 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SHF (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 15 | 45,167,214 - 45,201,116 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 15 | 45,167,214 - 45,201,175 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 15 | 45,459,412 - 45,493,314 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 15 | 43,246,704 - 43,280,665 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 15 | 22,350,695 - 22,384,650 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | q21.1 | NCBI | | | | | HuRef | 15 | 22,283,482 - 22,317,406 (-) | NCBI | | HuRef | | | CHM1_1 | 15 | 45,578,088 - 45,611,982 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 15 | 42,975,223 - 43,009,099 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Shf (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 122,179,373 - 122,199,650 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 122,179,373 - 122,199,643 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 122,348,892 - 122,369,147 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 122,348,892 - 122,369,162 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 122,174,628 - 122,194,654 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 122,040,333 - 122,058,265 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 123,498,710 - 123,518,780 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | E5 | NCBI | | | | | cM Map | 2 | 60.63 | NCBI | | | | |
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Shf (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 129,749,903 - 129,769,912 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 109,296,517 - 109,316,315 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 109,296,784 - 109,316,328 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 3 | 114,288,021 - 114,307,334 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 114,287,718 - 114,307,250 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 120,827,311 - 120,837,513 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 109,129,634 - 109,169,928 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 3 | 108,194,195 - 108,213,507 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q35 | NCBI | | | | |
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Shf (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955409 | 8,201,663 - 8,227,921 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955409 | 8,219,295 - 8,227,877 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SHF (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 16 | 34,393,075 - 34,439,369 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 15 | 38,571,242 - 38,617,573 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 15 | 24,100,832 - 24,146,702 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 15 | 42,468,468 - 42,489,184 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 15 | 42,469,202 - 42,500,239 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SHF (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 30 | 11,589,648 - 11,609,425 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 30 | 11,590,211 - 11,609,837 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 30 | 11,645,934 - 11,665,283 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 30 | 11,726,634 - 11,745,945 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 30 | 11,717,866 - 11,745,945 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 30 | 11,633,079 - 11,652,390 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 30 | 11,755,585 - 11,774,926 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 30 | 11,875,432 - 11,894,798 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SHF (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 126,549,747 - 126,570,859 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 126,549,736 - 126,570,657 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 141,148,729 - 141,169,643 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SHF (Chlorocebus sabaeus - green monkey) |
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Shf (Heterocephalus glaber - naked mole-rat) |
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