Dnajc27 (DnaJ heat shock protein family (Hsp40) member C27) - Rat Genome Database

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Gene: Dnajc27 (DnaJ heat shock protein family (Hsp40) member C27) Ictidomys tridecemlineatus
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Symbol: Dnajc27
Name: DnaJ heat shock protein family (Hsp40) member C27
RGD ID: 12470023
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN endosome to lysosome transport (inferred); obsolete regulation of MAPK export from nucleus (inferred); phagosome-lysosome fusion (inferred); ASSOCIATED WITH genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN intracellular organelle (inferred); late endosome (inferred); lysosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DnaJ heat shock protein family (Hsp40) member C27, transcript variant X1; DnaJ heat shock protein family (Hsp40) member C27, transcript variant X2; DnaJ heat shock protein family (Hsp40) member C27, transcript variant X3; dnaJ homolog subfamily C member 27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629263,610,942 - 63,645,852 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364937,193,709 - 7,228,625 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364937,193,726 - 7,225,415 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Dnajc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629263,610,942 - 63,645,852 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364937,193,709 - 7,228,625 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364937,193,726 - 7,225,415 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38224,943,636 - 24,972,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl224,943,636 - 24,972,094 (-)EnsemblGRCh38hg38GRCh38
GRCh37225,166,505 - 25,194,963 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36225,020,009 - 25,048,328 (-)NCBINCBI36Build 36hg18NCBI36
Celera225,006,881 - 25,035,200 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef224,904,307 - 24,933,051 (-)NCBIHuRef
CHM1_1225,095,974 - 25,124,431 (-)NCBICHM1_1
T2T-CHM13v2.0224,978,367 - 25,006,824 (-)NCBIT2T-CHM13v2.0
Dnajc27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,132,569 - 4,174,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,132,583 - 4,160,606 (+)EnsemblGRCm39 Ensembl
GRCm38124,082,569 - 4,124,140 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,082,583 - 4,110,606 (+)EnsemblGRCm38mm10GRCm38
MGSCv37124,082,612 - 4,110,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,082,500 - 4,110,490 (+)NCBIMGSCv36mm8
Celera124,011,071 - 4,039,179 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.99NCBI
Dnajc27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8632,788,215 - 32,842,418 (+)NCBIGRCr8
mRatBN7.2627,068,713 - 27,098,449 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl627,068,686 - 27,098,449 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx627,360,999 - 27,390,711 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0627,676,905 - 27,706,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0627,154,561 - 27,184,181 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0628,515,054 - 28,544,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,515,025 - 28,544,790 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0638,321,990 - 38,353,425 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4627,061,135 - 27,087,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera626,542,350 - 26,571,926 (+)NCBICelera
Cytogenetic Map6q14NCBI
Dnajc27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554697,044,804 - 7,078,666 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554697,046,671 - 7,078,666 (-)NCBIChiLan1.0ChiLan1.0
DNAJC27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212101,553,404 - 101,581,826 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A101,557,380 - 101,585,791 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A24,937,091 - 24,965,423 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A25,032,836 - 25,061,149 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A25,032,836 - 25,061,149 (-)Ensemblpanpan1.1panPan2
DNAJC27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11719,256,483 - 19,287,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1719,255,475 - 19,287,929 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1719,153,189 - 19,184,776 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01719,529,443 - 19,560,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1719,529,442 - 19,560,699 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11719,265,908 - 19,297,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01719,275,403 - 19,307,011 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01719,321,815 - 19,353,404 (-)NCBIUU_Cfam_GSD_1.0
DNAJC27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3113,816,772 - 113,857,113 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13113,816,718 - 113,857,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,005,430 - 121,045,814 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11482,695,889 - 82,725,142 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1482,695,850 - 82,720,956 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604529,441,301 - 29,470,662 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247387,265,907 - 7,306,822 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247387,265,899 - 7,306,848 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000006077   ⟹   ENSSTOP00000005437
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364937,193,709 - 7,228,625 (+)Ensembl
RefSeq Acc Id: XM_005322584   ⟹   XP_005322641
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629263,610,942 - 63,645,848 (-)NCBI
SpeTri2.0NW_0049364937,193,729 - 7,225,414 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357363   ⟹   XP_013212817
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629263,610,942 - 63,645,851 (-)NCBI
SpeTri2.0NW_0049364937,193,728 - 7,225,415 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271400   ⟹   XP_040127334
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629263,623,634 - 63,645,852 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005322641 (Get FASTA)   NCBI Sequence Viewer  
  XP_013212817 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127334 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005437.2
GenBank Protein KAG3267689 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267690 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267691 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005322641   ⟸   XM_005322584
- Peptide Label: isoform X1
- UniProtKB: I3M782 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212817   ⟸   XM_013357363
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040127334   ⟸   XM_040271400
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000005437   ⟸   ENSSTOT00000006077
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006080 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006077.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Dnajc27 ENTREZGENE
PANTHER DNAJ HEAT SHOCK PROTEIN FAMILY (HSP40) MEMBER C27 UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  Ras UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
  RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt I3M782 ENTREZGENE, UniProtKB/TrEMBL