Myorg (myogenesis regulating glycosidase (putative)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Myorg (myogenesis regulating glycosidase (putative)) Ictidomys tridecemlineatus
Analyze
Symbol: Myorg (Ensembl: SPMIP6)
Name: myogenesis regulating glycosidase (putative) (Ensembl:chromosome unknown C9orf24 homolog)
RGD ID: 12469434
Description: ENCODES a protein that exhibits alpha-tubulin binding (inferred); hydrolase activity, acting on glycosyl bonds (inferred); hydrolase activity, hydrolyzing O-glycosyl compounds (inferred); INVOLVED IN carbohydrate metabolic process (inferred); positive regulation of insulin-like growth factor receptor signaling pathway (inferred); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (inferred); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN axonemal A tubule inner sheath (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C9orf24 homolog; chromosome unknown open reading frame, human C9orf24; CUNH9orf24; Kiaa1161; KIAA1161 ortholog; LOC101965827; myogenesis-regulating glycosidase; spermatid-specific manchette-related protein 1; uncharacterized family 31 glucosidase KIAA1161 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,912,401 - 165,945,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365242,463,645 - 2,471,228 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365242,472,624 - 2,492,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365242,472,611 - 2,494,478 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myorg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,912,401 - 165,945,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365242,463,645 - 2,471,228 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365242,472,624 - 2,492,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365242,472,611 - 2,494,478 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYORG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,366,666 - 34,376,898 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,366,666 - 34,376,898 (-)EnsemblGRCh38hg38GRCh38
GRCh37934,366,664 - 34,376,896 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,358,907 - 34,366,894 (-)NCBINCBI36Build 36hg18NCBI36
Celera934,300,413 - 34,308,399 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,323,996 - 34,331,984 (-)NCBIHuRef
CHM1_1934,368,669 - 34,376,658 (-)NCBICHM1_1
T2T-CHM13v2.0934,385,154 - 34,395,421 (-)NCBIT2T-CHM13v2.0
Spmip6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,505,005 - 41,517,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm39 Ensembl
GRCm38441,505,005 - 41,517,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,452,042 - 41,464,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,693,678 - 41,706,004 (-)NCBIMGSCv36mm8
Celera441,166,278 - 41,178,565 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map421.7NCBI
Spmip6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,462,070 - 61,474,832 (-)NCBIGRCr8
mRatBN7.2556,666,160 - 56,678,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,666,058 - 56,678,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,883,713 - 57,896,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,883,675 - 57,896,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,411,541 - 62,423,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,925,020 - 58,937,602 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,262,017 - 55,274,732 (-)NCBICelera
Cytogenetic Map5q22NCBI
Spmip6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,718,517 - 1,735,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,718,474 - 1,733,980 (+)NCBIChiLan1.0ChiLan1.0
SPMIP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,206,242 - 90,237,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1990,211,988 - 90,243,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,215,298 - 34,234,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,024,088 - 35,043,323 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,024,088 - 35,043,323 (-)Ensemblpanpan1.1panPan2
SPMIP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,078,682 - 51,092,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,078,808 - 51,091,818 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,708,243 - 49,721,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,020,666 - 52,034,204 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,020,792 - 52,033,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,683,358 - 50,696,893 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,551,460 - 50,564,997 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,316,258 - 51,329,796 (-)NCBIUU_Cfam_GSD_1.0
SPMIP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,419,795 - 32,435,884 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,419,965 - 32,435,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,588,942 - 36,604,343 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,215,162 - 46,234,101 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,215,619 - 46,234,044 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,331,776 - 43,350,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,784,128 - 38,799,912 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,784,071 - 38,800,097 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005326205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013359041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013359042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013359056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013359057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021726932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005733995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000010105   ⟹   ENSSTOP00000009065
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365242,463,645 - 2,471,228 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000010111   ⟹   ENSSTOP00000009071
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365242,472,624 - 2,492,768 (-)Ensembl
RefSeq Acc Id: XM_005326204   ⟹   XP_005326261
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005326205   ⟹   XP_005326262
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359041   ⟹   XP_013214495
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,925,031 - 165,945,348 (-)NCBI
SpeTri2.0NW_0049365242,472,611 - 2,494,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359042   ⟹   XP_013214496
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,925,031 - 165,945,348 (-)NCBI
SpeTri2.0NW_0049365242,472,611 - 2,494,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359056   ⟹   XP_013214510
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359057   ⟹   XP_013214511
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040285931   ⟹   XP_040141865
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,945,348 (-)NCBI
RefSeq Acc Id: XM_040285932   ⟹   XP_040141866
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,945,731 (-)NCBI
RefSeq Acc Id: XM_040285933   ⟹   XP_040141867
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,927,260 (-)NCBI
RefSeq Acc Id: XM_040285934   ⟹   XP_040141868
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,888 (-)NCBI
RefSeq Acc Id: XM_040285935   ⟹   XP_040141869
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,916,065 - 165,923,908 (-)NCBI
RefSeq Acc Id: XM_040285936   ⟹   XP_040141870
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,925,068 - 165,945,348 (-)NCBI
RefSeq Acc Id: XM_040285937   ⟹   XP_040141871
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,919,875 - 165,945,348 (-)NCBI
RefSeq Acc Id: XM_040285938   ⟹   XP_040141872
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,922,794 - 165,945,348 (-)NCBI
RefSeq Acc Id: XR_005733995
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,912,401 - 165,945,348 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013214496   ⟸   XM_013359042
- Peptide Label: isoform X7
- UniProtKB: I3MEU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214495   ⟸   XM_013359041
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040141866   ⟸   XM_040285932
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040141865   ⟸   XM_040285931
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141867   ⟸   XM_040285933
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040141869   ⟸   XM_040285935
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141868   ⟸   XM_040285934
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_013214511   ⟸   XM_013359057
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214510   ⟸   XM_013359056
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005326262   ⟸   XM_005326205
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005326261   ⟸   XM_005326204
- Peptide Label: isoform X4
- UniProtKB: I3MEU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141871   ⟸   XM_040285937
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040141872   ⟸   XM_040285938
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040141870   ⟸   XM_040285936
- Peptide Label: isoform X6
RefSeq Acc Id: ENSSTOP00000009065   ⟸   ENSSTOT00000010105
RefSeq Acc Id: ENSSTOP00000009071   ⟸   ENSSTOT00000010111
Protein Domains
Glycoside hydrolase family 31 TIM barrel   Glycosyl hydrolase family 31 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010111 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000010116 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010105.3 UniProtKB/TrEMBL
  ENSSTOT00000010111.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1180 UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro Glyco_hydro_31 UniProtKB/TrEMBL
  Glyco_hydro_31_C UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
  SMRP1 UniProtKB/TrEMBL
NCBI Gene LOC101965827 ENTREZGENE
PANTHER GLYCOSIDASE FAMILY 31 UniProtKB/TrEMBL
  MYOGENESIS-REGULATING GLYCOSIDASE UniProtKB/TrEMBL
  PTHR35664 UniProtKB/TrEMBL
  SPERMATID-SPECIFIC MANCHETTE-RELATED PROTEIN 1 UniProtKB/TrEMBL
Pfam Glyco_hydro_31 UniProtKB/TrEMBL
  Glyco_hydro_31_3rd UniProtKB/TrEMBL
  SMRP1 UniProtKB/TrEMBL
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt I3MEU5 ENTREZGENE, UniProtKB/TrEMBL
  I3MEU9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Myorg  myogenesis regulating glycosidase (putative)  CUNH9orf24  chromosome unknown C9orf24 homolog  Symbol and/or name change 5135510 APPROVED
2021-03-25 CUNH9orf24  chromosome unknown C9orf24 homolog  Myorg  myogenesis regulating glycosidase (putative)  Data merged from RGD:12457701 737654 PROVISIONAL
2017-08-01 Myorg  myogenesis regulating glycosidase (putative)  Kiaa1161  KIAA1161 ortholog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH9orf24  chromosome unknown C9orf24 homolog  LOC101965827  chromosome unknown open reading frame, human C9orf24  Symbol and/or name change 5135510 APPROVED