Clba1 (clathrin binding box of aftiphilin containing 1)

Gene: Clba1 (clathrin binding box of aftiphilin containing 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Clba1

Name:

clathrin binding box of aftiphilin containing 1

RGD ID:

12469355

Description:

ENCODES a protein that exhibits clathrin binding (inferred); INVOLVED IN intracellular transport (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog); FOUND IN AP-1 adaptor complex (inferred); trans-Golgi network membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown open reading frame, human C14orf79; clathrin binding box of aftiphilin containing; LOC101961282; uncharacterized protein C14orf79 homolog; uncharacterized protein CLBA1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,636,052 - 1,643,623 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	464,507 - 472,642 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	464,993 - 472,608 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

focal segmental glomerulosclerosis 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular transport (IEA)

Cellular Component

AP-1 adaptor complex (IEA)

trans-Golgi network membrane (IEA)

Molecular Function

clathrin binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Clba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,636,052 - 1,643,623 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	464,507 - 472,642 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	464,993 - 472,608 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLBA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	104,985,788 - 105,001,274 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	104,985,775 - 105,010,482 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	105,452,125 - 105,461,853 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	104,523,661 - 104,532,900 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	104,526,537 - 104,532,900	NCBI
Celera	14	85,506,829 - 85,516,068 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	85,646,461 - 85,655,693 (+)	NCBI		HuRef
CHM1_1	14	105,390,377 - 105,399,616 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	99,230,266 - 99,245,748 (+)	NCBI		T2T-CHM13v2.0

Clba1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	112,772,595 - 112,779,865 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	112,772,557 - 112,779,872 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	112,808,975 - 112,816,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	112,808,937 - 112,816,252 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	114,047,186 - 114,054,456 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	113,256,783 - 113,264,053 (+)	NCBI		MGSCv36	mm8
Celera	12	114,017,579 - 114,024,842 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.2	NCBI

Clba1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,703,947 - 137,710,743 (+)	NCBI		GRCr8
mRatBN7.2	6	131,882,866 - 131,889,662 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	131,882,609 - 131,889,662 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	132,052,761 - 132,059,557 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,342,975 - 132,349,889 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,717,251 - 131,724,151 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,386,694 - 137,393,490 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,386,422 - 137,393,506 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	146,389,788 - 146,396,584 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	137,809,373 - 137,816,169 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	137,815,559 - 137,822,355 (+)	NCBI
Celera	6	129,422,066 - 129,428,862 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Clba1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	3,333,957 - 3,341,256 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	3,325,052 - 3,340,534 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLBA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	106,167,242 - 106,188,879 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	105,386,674 - 105,397,168 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	85,634,349 - 85,649,411 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	105,419,840 - 105,429,263 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	105,419,834 - 105,441,870 (+)	Ensembl	panpan1.1		panPan2

CLBA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,448,580 - 72,454,685 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	72,443,323 - 72,454,191 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	71,959,132 - 71,967,232 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	72,734,778 - 72,742,877 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	8	72,417,326 - 72,423,576 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,461,885 - 72,468,127 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	72,855,875 - 72,863,973 (+)	NCBI		UU_Cfam_GSD_1.0

CLBA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	7	131,256,197 - 131,260,838 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLBA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	82,905,148 - 82,918,368 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	82,905,218 - 82,916,861 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	70,337,315 - 70,350,265 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clba1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	394,627 - 401,296 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	394,718 - 401,828 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013338 ⟹ ENSSTOP00000011953

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936621	464,507 - 472,642 (-)	Ensembl

RefSeq Acc Id:

XM_005334694 ⟹ XP_005334751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	1,636,052 - 1,643,623 (-)	NCBI
SpeTri2.0	NW_004936621	464,993 - 472,608 (-)	NCBI

Sequence:

show sequence

CACTGGCGCGGCCAGAGGGGATGCGGGCAGCCGCCCCAGAGAAGTGCGTGGGGCTGCCCTTCGC
CCTCCCGCCAGGGACGCGCTCCGGGGCTCTAGAGCGCCGCGCCATTTCTTCCCTTTTGGGCCTG
GCGCTAGAGCCCGGCAGCCCGCCTTGTCGTTGGGGCCCCCAAGACGCGCTCCAGACTGCAGCGG
TCCTGCCGGTGGGCTTACGGGTCCGGCACCTTGGTTGGCCGCGGGACACGCCCCTGTGCTGGAC
TGGTCAGCAGCGGCCAGGCGGCGTCGGCACACAGCAGCACGTGGGTACTCGCCCGGAAGCCGCG
CCGGCCCCGACAGCGTGGCTGGCGGCACCCCAGGCCCTGTCTAGCGCAGCCCTGGGCAGCTTCA
GCCCAGCAACTGTATGCCTCGTGCGCAGCTCCTCTTCTGGTCTGCTGGCCTGGCGGCACGAAGA
TGCAAGACCGGCAGAAGTGGTGGGGAGAGTCCGTGAGTGACTTCACAGGGGAACGGGCCGAGGT
TTCCCACTGCTACACAGCTGAAGGACAGAGTGGTGACAATTTGGAACGGATAAGGATCTACAGT
GAGGGTCCTCCGTCTGTGCCAGGTGGGAAAGCCAGCAGCTCTCCAACGGGAGAGGGCCTTCCGA
CTTGCACCACTAGTTGTACCGACGCGGGGGAGCTCAGCAGCACGTGGGGGGAGTTTGAAGGCTT
TAGAGAATCTTCAGCCAAGTCTGGACTCCCTCAGTCCCTTGAACTTCTGGAAAGACCCACCGAT
CCTCAGCCACTAGGAATTCCTGCCTTAAAGGAAGATGGTTCTCACCTACCACACCAGGGTGGAT
CCGGGGCAACAGGAATCACTTCTCACCCATCTTCAGAGCCTGTTCTCAGGTATGAGAACATATT
TAGGTTTGCTTTTCAAGAAGTCACAGTTGAGCAGGCAACTGAAGATGTTTCCACCTTAGACCAT
TTCTTGGACATAAGCAGTGAAGAAGACCCTGGCCTTGCATCTGCACATAGACTGTGTTCTGAAT
CTAGAAAAGTCTGGCGAGCCCTTCAGAACACCAGCAACATGTCTGCTTTGCGATGCCTCTGGAG
CCAGTCTCATTGCCAGGAGAAGCTCTTCCTGGTTCTTGGCATAGAAGCTGCTCAGAAGAGTCCT
TCCAGAGACCAGGGTCACATTTCAGAAGGTCCTGACCTCAAAGGTCCTGAAGAGCTGCTGGCAC
TCAGCACCTTCGACCTGCCCCACTGCAAAGCCCTGATCCAGACGAAGCTCTCAGGGACACCTGG
CAGCAGACAGGGGAGCCTCATTACCTACAGCCTCTTTCTGAAGACACCCCTGCATGGAAACGGG
CGACACATCACAAGTCCACAGGAAAAGAAGGTTTTCCCTCCACGTCACCTAAAGCTGGCGTTTT
TTAACAGGGATGTGTGCTAGAAACAGGAGTATGTCATGTAGGCATTTCACATCATCTCACTGGT
TGGGTTTGGTTTCCTAGGCTCTTTCAAAACCCCTGCCTCAGGTCTGATCAGGAAGCATGGGGTG
TCTTGGGCAGAGCCAGTCCCCAAGCAGAGGGGAGGGGTTTCTGGATGCACTGCAGCCTGACCAG
CAGATGCCACCTGCTCCTGGTGGAGGGTGTCAGGGATGATCCCACACCTGGCCCAAAGTGGGGC
ATGTACTGAAATACCACCTGGGAGACAGCTGCACTTTGAGAAACAGCATTGGCACCTGGTCCCA
GGAGGTCCTGGGCTTCTGTGTTGTTCCTGGAAGTGCCATGAGCACTCCCCAACCGCATTCACAC
TGGTGGCCTTGGGGACAGGCCTTTCTGATGGCTGGGAGGCCACACTGCGCCAGCCCTGGAGGCC
CAGGTGGGTAGGCAAGTGTATTTCACTGGTCATCTCCTGCATAGATGGTTTTCTTCCAGGAAAG
GGCCAAGCGGGCAGCACTGACTTTGTAGAGCTTTACTTAATAAAGGGCCTCAGTAAGCCTGTGC
TCTTGCTGACTGGTTGACTCTGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005334751	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011953.2
GenBank Protein	KAG3260237	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005334751 ⟸ XM_005334694

- UniProtKB:

I3MKT5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQDRQKWWGESVSDFTGERAEVSHCYTAEGQSGDNLERIRIYSEGPPSVPGGKASSSPTGEGLP
TCTTSCTDAGELSSTWGEFEGFRESSAKSGLPQSLELLERPTDPQPLGIPALKEDGSHLPHQGG
SGATGITSHPSSEPVLRYENIFRFAFQEVTVEQATEDVSTLDHFLDISSEEDPGLASAHRLCSE
SRKVWRALQNTSNMSALRCLWSQSHCQEKLFLVLGIEAAQKSPSRDQGHISEGPDLKGPEELLA
LSTFDLPHCKALIQTKLSGTPGSRQGSLITYSLFLKTPLHGNGRHITSPQEKKVFPPRHLKLAF
FNRDVC

hide sequence

RefSeq Acc Id:

ENSSTOP00000011953 ⟸ ENSSTOT00000013338

Protein Domains

Aftiphilin clathrin-binding box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013345	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013338.3	UniProtKB/TrEMBL
InterPro	Aftin-like	UniProtKB/TrEMBL
	Clathrin-bd	UniProtKB/TrEMBL
NCBI Gene	LOC101961282	ENTREZGENE
PANTHER	CLATHRIN_BDG DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR16156	UniProtKB/TrEMBL
Pfam	Clathrin_bdg	UniProtKB/TrEMBL
UniProt	I3MKT5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-25	Clba1	clathrin binding box of aftiphilin containing 1		clathrin binding box of aftiphilin containing	Symbol and/or name change	5135510	APPROVED
2017-07-13	Clba1	clathrin binding box of aftiphilin containing	LOC101961282	chromosome unknown open reading frame, human C14orf79	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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