Nipal4 (NIPA like domain containing 4) - Rat Genome Database

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Gene: Nipal4 (NIPA like domain containing 4) Ictidomys tridecemlineatus
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Symbol: Nipal4
Name: NIPA like domain containing 4
RGD ID: 12469106
Description: INVOLVED IN magnesium ion transport (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 6 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: magnesium transporter NIPA4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,236,398 - 107,250,072 (-)NCBI
SpeTri2.0NW_0049365155,687,364 - 5,699,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Nipal4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,236,398 - 107,250,072 (-)NCBI
SpeTri2.0NW_0049365155,687,364 - 5,699,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPAL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5157,460,213 - 157,474,722 (+)EnsemblGRCh38hg38GRCh38
GRCh385157,460,019 - 157,474,722 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375156,887,027 - 156,901,730 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365156,819,605 - 156,834,308 (+)NCBINCBI36hg18NCBI36
Celera5152,913,590 - 152,928,293 (+)NCBI
Cytogenetic Map5q33.3NCBI
HuRef5151,975,322 - 151,990,026 (+)NCBIHuRef
CHM1_15156,319,751 - 156,334,452 (+)NCBICHM1_1
Nipal4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,038,982 - 46,057,186 (-)NCBIGRCm39mm39
GRCm39 Ensembl1146,038,982 - 46,057,335 (-)Ensembl
GRCm381146,148,155 - 46,166,359 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,148,155 - 46,166,508 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,961,657 - 45,979,861 (-)NCBIGRCm37mm9NCBIm37
MGSCv361145,991,578 - 46,009,782 (-)NCBImm8
Celera1150,737,284 - 50,756,134 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
Nipal4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21030,583,926 - 30,600,640 (-)NCBI
Rnor_6.0 Ensembl1031,241,394 - 31,258,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01031,241,394 - 31,258,105 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01031,060,605 - 31,077,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,283,585 - 31,300,297 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11031,286,597 - 31,301,325 (-)NCBI
Celera1030,036,962 - 30,053,673 (-)NCBICelera
Cytogenetic Map10q21NCBI
Nipal4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,635,724 - 11,650,942 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,635,724 - 11,648,359 (+)NCBIChiLan1.0ChiLan1.0
NIPAL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15159,472,383 - 159,492,182 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,472,383 - 159,492,182 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05152,856,602 - 152,871,218 (+)NCBIMhudiblu_PPA_v0panPan3
NIPAL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,735,094 - 52,748,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,736,693 - 52,745,189 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,627,190 - 52,640,198 (-)NCBI
ROS_Cfam_1.0453,171,446 - 53,184,445 (-)NCBI
UMICH_Zoey_3.1452,998,113 - 53,011,101 (-)NCBI
UNSW_CanFamBas_1.0453,104,623 - 53,117,611 (-)NCBI
UU_Cfam_GSD_1.0453,621,790 - 53,634,790 (-)NCBI
NIPAL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,807,054 - 65,826,799 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,814,588 - 65,831,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,669,182 - 71,683,851 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIPAL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12359,848,827 - 59,865,369 (+)NCBI
ChlSab1.1 Ensembl2359,849,970 - 59,863,601 (+)Ensembl
Vero_WHO_p1.0NW_02366603417,765,125 - 17,780,379 (-)NCBI
Nipal4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473331,945,996 - 31,960,187 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005325442   ⟹   XP_005325499
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,236,398 - 107,250,072 (-)NCBI
SpeTri2.0NW_0049365155,687,364 - 5,699,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040273719   ⟹   XP_040129653
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,236,398 - 107,250,070 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005325499 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129653 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3265386 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005325499   ⟸   XM_005325442
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040129653   ⟸   XM_040273719
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Nipal4 ENTREZGENE