Efna5 (ephrin A5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Efna5 (ephrin A5) Ictidomys tridecemlineatus
Analyze
Symbol: Efna5
Name: ephrin A5
RGD ID: 12467299
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN apoptotic process (ortholog); axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH anencephaly (ortholog); COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN GABA-ergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin A5, transcript variant X1; ephrin A5, transcript variant X2; ephrin-A5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365312,217,467 - 2,267,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Efna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365312,217,467 - 2,267,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385107,376,894 - 107,670,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5107,376,894 - 107,670,937 (-)EnsemblGRCh38hg38GRCh38
GRCh375106,712,595 - 107,006,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365106,744,250 - 107,034,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 345106,744,249 - 107,034,495NCBI
Celera5102,652,515 - 102,946,033 (-)NCBICelera
Cytogenetic Map5q21.3NCBI
HuRef5101,885,499 - 102,179,416 (-)NCBIHuRef
CHM1_15106,145,383 - 106,439,350 (-)NCBICHM1_1
T2T-CHM13v2.05107,879,857 - 108,173,778 (-)NCBIT2T-CHM13v2.0
Efna5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391762,909,949 - 63,188,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)EnsemblGRCm39 Ensembl
GRCm381762,602,957 - 62,881,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv371762,952,306 - 63,230,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,290,210 - 62,566,779 (-)NCBIMGSCv36mm8
Celera1766,941,186 - 67,218,870 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.57NCBI
Efna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89109,763,786 - 110,042,396 (-)NCBIGRCr8
mRatBN7.29102,316,753 - 102,595,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9110,731,253 - 111,005,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09115,846,837 - 116,120,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,197,132 - 114,470,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,054,002 - 110,329,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09109,624,143 - 109,898,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,227,615 - 101,532,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,437,094 - 101,742,176 (-)NCBI
Celera999,743,743 - 100,016,279 (-)NCBICelera
Cytogenetic Map9q37NCBI
Efna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554186,920,919 - 7,185,478 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554186,919,270 - 7,188,561 (+)NCBIChiLan1.0ChiLan1.0
EFNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24102,656,917 - 102,958,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15100,810,566 - 101,112,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05102,732,268 - 103,026,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15108,548,927 - 108,842,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5108,548,927 - 108,598,942 (-)Ensemblpanpan1.1panPan2
EFNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.134,272,138 - 4,546,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl34,272,518 - 4,542,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha35,666,868 - 5,947,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.034,163,164 - 4,443,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl34,169,390 - 4,439,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.134,102,672 - 4,382,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.034,131,173 - 4,411,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.034,274,587 - 4,554,692 (+)NCBIUU_Cfam_GSD_1.0
EFNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,052,889 - 117,095,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12310,823,243 - 11,115,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2310,823,261 - 10,873,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660363,139,584 - 3,432,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,341,132 - 25,611,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,336,851 - 25,611,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004726   ⟹   ENSSTOP00000004242
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)Ensembl
RefSeq Acc Id: XM_021727683   ⟹   XP_021583358
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBI
SpeTri2.0NW_0049365312,217,467 - 2,267,263 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004242.3
GenBank Protein KAG3266262 (Get FASTA)   NCBI Sequence Viewer  
  KAG3266263 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021583358   ⟸   XM_021727683
- Sequence:
RefSeq Acc Id: ENSSTOP00000004242   ⟸   ENSSTOT00000004726
Protein Domains
Ephrin RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004729 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004726.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.420 UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/TrEMBL
  Ephrin UniProtKB/TrEMBL
  Ephrin-A_Ecto UniProtKB/TrEMBL
  Ephrin_CS UniProtKB/TrEMBL
  Ephrin_RBD UniProtKB/TrEMBL
NCBI Gene Efna5 ENTREZGENE
PANTHER EPHRIN-A5 UniProtKB/TrEMBL
  PTHR11304 UniProtKB/TrEMBL
Pfam Ephrin UniProtKB/TrEMBL
PRINTS EPHRIN UniProtKB/TrEMBL
PROSITE EPHRIN_RBD_1 UniProtKB/TrEMBL
  EPHRIN_RBD_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49503 UniProtKB/TrEMBL
UniProt I3M4S1_ICTTR UniProtKB/TrEMBL