Cdc27 (cell division cycle 27) - Rat Genome Database

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Gene: Cdc27 (cell division cycle 27) Ictidomys tridecemlineatus
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Symbol: Cdc27
Name: cell division cycle 27
RGD ID: 12465499
Description: ENCODES a protein that exhibits protein phosphatase binding (inferred); INVOLVED IN metaphase/anaphase transition of mitotic cell cycle (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); hepatocellular carcinoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN anaphase-promoting complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 27, transcript variant X1; cell division cycle 27, transcript variant X2; cell division cycle 27, transcript variant X3; cell division cycle 27, transcript variant X4; cell division cycle 27, transcript variant X5; cell division cycle 27, transcript variant X6; cell division cycle 27, transcript variant X7; cell division cycle 27, transcript variant X8; cell division cycle protein 27 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560216,432,450 - 16,493,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365412,700,997 - 2,762,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560216,432,450 - 16,493,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365412,700,997 - 2,762,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,117,703 - 47,189,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,117,703 - 47,189,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371745,195,069 - 45,266,661 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,552,625 - 42,621,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 341742,552,624 - 42,621,664NCBI
Celera1741,645,340 - 41,716,724 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,572,496 - 40,644,750 (-)NCBIHuRef
CHM1_11745,260,254 - 45,331,607 (-)NCBICHM1_1
T2T-CHM13v2.01747,979,197 - 48,051,640 (-)NCBIT2T-CHM13v2.0
Cdc27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911104,393,350 - 104,441,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11104,393,571 - 104,441,446 (-)EnsemblGRCm39 Ensembl
GRCm3811104,502,524 - 104,550,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11104,502,745 - 104,550,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711104,363,838 - 104,411,934 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611104,318,606 - 104,376,937 (-)NCBIMGSCv36mm8
Celera11116,230,588 - 116,278,484 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.79NCBI
Cdc27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81089,900,676 - 89,949,770 (-)NCBIGRCr8
mRatBN7.21089,400,720 - 89,449,816 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1089,400,940 - 89,449,736 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1094,440,366 - 94,485,331 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01093,903,884 - 93,948,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01089,306,665 - 89,353,815 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01092,551,754 - 92,602,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1092,554,081 - 92,602,082 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01092,314,321 - 92,364,553 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41093,678,790 - 93,725,987 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11093,693,161 - 93,740,357 (-)NCBI
Celera1088,097,228 - 88,143,638 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cdc27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554789,927,871 - 10,002,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554789,927,871 - 10,002,020 (+)NCBIChiLan1.0ChiLan1.0
CDC27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,825,006 - 17,896,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,790,590 - 19,860,083 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01710,259,194 - 10,331,011 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11710,473,516 - 10,545,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1710,473,646 - 10,545,549 (+)Ensemblpanpan1.1panPan2
CDC27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.199,281,152 - 9,351,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl99,281,196 - 9,348,678 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,946,699 - 11,017,232 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0910,870,030 - 10,940,621 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl910,870,065 - 10,940,617 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.199,884,169 - 9,954,826 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0917,569,886 - 17,640,242 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0917,516,367 - 17,586,916 (-)NCBIUU_Cfam_GSD_1.0
CDC27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,810,910 - 16,882,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,810,868 - 16,882,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,834,050 - 16,905,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11659,497,731 - 59,564,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1659,497,713 - 59,564,480 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607730,209,741 - 30,276,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,026,425 - 2,092,857 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,026,433 - 2,105,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000007818   ⟹   ENSSTOP00000006997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365412,704,159 - 2,753,192 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030270   ⟹   ENSSTOP00000030942
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365412,700,997 - 2,762,147 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035285   ⟹   ENSSTOP00000025324
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365412,719,821 - 2,762,013 (-)Ensembl
RefSeq Acc Id: XM_005328167   ⟹   XP_005328224
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,452 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005328168   ⟹   XP_005328225
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,452 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359923   ⟹   XP_013215377
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,451 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728380   ⟹   XP_021584055
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,451 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,703,484 - 2,762,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728381   ⟹   XP_021584056
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,451 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,704,016 - 2,762,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728382   ⟹   XP_021584057
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,450 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,704,153 - 2,762,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728383   ⟹   XP_021584058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,432,451 - 16,493,366 (+)NCBI
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040268644   ⟹   XP_040124578
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560216,442,442 - 16,493,366 (+)NCBI
RefSeq Acc Id: XP_005328225   ⟸   XM_005328168
- Peptide Label: isoform X4
- UniProtKB: I3MAH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005328224   ⟸   XM_005328167
- Peptide Label: isoform X3
- UniProtKB: A0A287DBJ2 (UniProtKB/TrEMBL),   I3MAH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215377   ⟸   XM_013359923
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021584058   ⟸   XM_021728383
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021584055   ⟸   XM_021728380
- Peptide Label: isoform X1
- UniProtKB: I3MAH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584056   ⟸   XM_021728381
- Peptide Label: isoform X2
- UniProtKB: I3MAH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584057   ⟸   XM_021728382
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040124578   ⟸   XM_040268644
- Peptide Label: isoform X8
- UniProtKB: I3MAH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000030942   ⟸   ENSSTOT00000030270
RefSeq Acc Id: ENSSTOP00000025324   ⟸   ENSSTOT00000035285
RefSeq Acc Id: ENSSTOP00000006997   ⟸   ENSSTOT00000007818


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007807 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007818.3 UniProtKB/TrEMBL
  ENSSTOT00000030270.1 UniProtKB/TrEMBL
  ENSSTOT00000035285.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Cdc27 ENTREZGENE
PANTHER CELL DIVISION CYCLE 16,23,27 UniProtKB/TrEMBL
  CELL DIVISION CYCLE PROTEIN 27 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC3 UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A287CVM5_ICTTR UniProtKB/TrEMBL
  A0A287DBJ2 ENTREZGENE, UniProtKB/TrEMBL
  I3MAH3 ENTREZGENE, UniProtKB/TrEMBL