Satl1 (spermidine/spermine N1-acetyl transferase like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Satl1 (spermidine/spermine N1-acetyl transferase like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Satl1
Name: spermidine/spermine N1-acetyl transferase like 1
RGD ID: 12464831
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermidine/spermine N(1)-acetyltransferase-like protein 1; spermidine/spermine N1-acetyl transferase-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X59,540,126 - 59,554,699 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365475,858,120 - 5,874,745 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Satl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X59,540,126 - 59,554,699 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365475,858,120 - 5,874,745 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SATL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X85,092,284 - 85,243,779 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX85,092,284 - 85,243,911 (-)EnsemblGRCh38hg38GRCh38
GRCh37X84,347,290 - 84,498,785 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X84,233,956 - 84,250,102 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX84,586,693 - 84,603,357 (-)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX77,920,841 - 77,937,503 (-)NCBIHuRef
CHM1_1X84,241,011 - 84,257,690 (-)NCBICHM1_1
T2T-CHM13v2.0X83,521,243 - 83,672,628 (-)NCBIT2T-CHM13v2.0
Satl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X111,294,002 - 111,316,476 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX111,294,000 - 111,316,476 (-)EnsemblGRCm39 Ensembl
GRCm38X112,384,305 - 112,406,779 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX112,384,303 - 112,406,779 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X109,497,914 - 109,520,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X108,501,249 - 108,523,700 (-)NCBIMGSCv36mm8
CeleraX99,023,402 - 99,045,933 (-)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX48.76NCBI
Satl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X81,645,584 - 81,661,393 (-)NCBIGRCr8
mRatBN7.2X77,453,357 - 77,469,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX77,453,357 - 77,469,158 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX79,110,705 - 79,126,134 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X82,541,648 - 82,557,097 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X80,129,815 - 80,145,290 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X83,772,526 - 83,788,556 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX83,772,495 - 83,788,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X83,722,050 - 83,737,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X100,989,274 - 101,004,732 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX78,752,966 - 78,768,399 (-)NCBICelera
Cytogenetic MapXq31NCBI
SATL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X84,571,201 - 84,721,438 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X84,572,478 - 84,725,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X74,163,746 - 74,314,004 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X84,273,288 - 84,290,102 (-)NCBIpanpan1.1PanPan1.1panPan2
SATL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X65,955,694 - 65,984,081 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX65,955,743 - 65,983,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX56,712,132 - 56,740,615 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X67,284,657 - 67,313,140 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX67,284,706 - 67,312,351 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X64,934,304 - 64,962,785 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X66,566,682 - 66,595,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X66,163,060 - 66,191,543 (-)NCBIUU_Cfam_GSD_1.0
SATL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X68,356,415 - 68,383,729 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X78,156,763 - 78,182,928 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SATL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X73,930,049 - 73,956,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX73,930,156 - 73,955,780 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660676,884,051 - 6,910,526 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_040282720   ⟹   XP_040138654
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,540,126 - 59,554,699 (-)NCBI
RefSeq Acc Id: XM_040282724   ⟹   XP_040138658
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X59,546,802 - 59,554,699 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040138654 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138658 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3272519 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040138654   ⟸   XM_040282720
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138658   ⟸   XM_040282724
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Satl1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 Satl1  spermidine/spermine N1-acetyl transferase like 1    spermidine/spermine N1-acetyl transferase-like 1  Symbol and/or name change 5135510 APPROVED