Lamp3 (lysosomal associated membrane protein 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lamp3 (lysosomal associated membrane protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Lamp3
Name: lysosomal associated membrane protein 3
RGD ID: 12464735
Description: INVOLVED IN negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (ortholog); negative regulation of proteasomal protein catabolic process (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH Currarino syndrome (ortholog); Human Influenza (ortholog); FOUND IN alveolar lamellar body membrane (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lysosome-associated membrane glycoprotein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,825,785 - 112,855,416 (-)NCBI
SpeTri2.0NW_004936566365,326 - 394,985 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Lamp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,825,785 - 112,855,416 (-)NCBI
SpeTri2.0NW_004936566365,326 - 394,985 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3183,122,215 - 183,163,839 (-)EnsemblGRCh38hg38GRCh38
GRCh383183,122,215 - 183,162,761 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373182,840,003 - 182,880,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,322,697 - 184,363,361 (-)NCBINCBI36hg18NCBI36
Build 343184,322,705 - 184,363,325NCBI
Celera3181,274,880 - 181,315,525 (-)NCBI
Cytogenetic Map3q27.1NCBI
HuRef3180,244,791 - 180,285,442 (-)NCBIHuRef
CHM1_13182,802,887 - 182,843,546 (-)NCBICHM1_1
Lamp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,472,131 - 19,525,115 (-)NCBIGRCm39mm39
GRCm39 Ensembl1619,472,128 - 19,525,125 (-)Ensembl
GRCm381619,653,381 - 19,706,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,653,378 - 19,706,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371619,653,474 - 19,706,458 (-)NCBIGRCm37mm9NCBIm37
MGSCv361619,566,949 - 19,619,879 (-)NCBImm8
Celera1620,221,734 - 20,274,680 (-)NCBICelera
Cytogenetic Map16A3NCBI
Lamp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21181,153,491 - 81,224,643 (+)NCBI
Rnor_6.0 Ensembl1184,972,132 - 85,000,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01184,930,965 - 85,000,694 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01187,990,643 - 88,058,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41183,449,326 - 83,476,622 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11183,507,246 - 83,534,539 (+)NCBI
Celera1180,028,176 - 80,056,319 (+)NCBICelera
Cytogenetic Map11q23NCBI
Lamp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542024,155,793 - 24,185,366 (+)NCBIChiLan1.0ChiLan1.0
LAMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13188,324,139 - 188,363,448 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,324,660 - 188,363,268 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03180,152,363 - 180,193,223 (-)NCBIMhudiblu_PPA_v0panPan3
LAMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,092,172 - 16,126,563 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3420,179,722 - 20,215,048 (-)NCBI
ROS_Cfam_1.03415,998,428 - 16,033,717 (-)NCBI
UMICH_Zoey_3.13416,039,288 - 16,074,827 (-)NCBI
UNSW_CanFamBas_1.03416,022,905 - 16,058,209 (-)NCBI
UU_Cfam_GSD_1.03416,262,916 - 16,298,199 (-)NCBI
LAMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113121,081,717 - 121,117,660 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,583,899 - 130,620,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,245,146 - 6,285,481 (+)NCBI
Vero_WHO_p1.0NW_02366606315,057,337 - 15,088,451 (+)NCBI
Lamp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473073,264,110 - 73,298,951 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021729821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021729821   ⟹   XP_021585496
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602112,825,785 - 112,855,416 (-)NCBI
SpeTri2.0NW_004936566365,326 - 394,985 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021585496 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271078 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021585496   ⟸   XM_021729821
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010372 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009310 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010373 UniProtKB/TrEMBL
InterPro Lysosome-assoc_membr_glycop UniProtKB/TrEMBL
NCBI Gene Lamp3 ENTREZGENE
PANTHER PTHR11506 UniProtKB/TrEMBL
Pfam Lamp UniProtKB/TrEMBL
PRINTS LYSASSOCTDMP UniProtKB/TrEMBL
PROSITE LAMP_3 UniProtKB/TrEMBL
UniProt I3MFD3_ICTTR UniProtKB/TrEMBL