LOC101961052 (keratin-associated protein 8-1) - Rat Genome Database

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Gene: LOC101961052 (keratin-associated protein 8-1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101961052 (Ensembl: KRTAP8-1)
Name: keratin-associated protein 8-1
RGD ID: 12464269
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN intermediate filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KRTAP8-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497126,389,915 - 26,390,475 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650011,077,375 - 11,077,560 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650011,077,249 - 11,077,560 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC101961052
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497126,389,915 - 26,390,475 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650011,077,375 - 11,077,560 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650011,077,249 - 11,077,560 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRTAP8-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,812,697 - 30,813,274 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,812,697 - 30,813,274 (-)EnsemblGRCh38hg38GRCh38
GRCh372132,185,015 - 32,185,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,106,886 - 31,107,441 (-)NCBINCBI36Build 36hg18NCBI36
Build 342131,106,886 - 31,107,441NCBI
Celera2117,367,980 - 17,368,535 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2117,593,996 - 17,594,551 (-)NCBIHuRef
CHM1_12131,746,863 - 31,747,418 (-)NCBICHM1_1
T2T-CHM13v2.02129,180,318 - 29,180,895 (-)NCBIT2T-CHM13v2.0
Krtap8-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391689,284,262 - 89,284,840 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1689,284,267 - 89,284,840 (-)EnsemblGRCm39 Ensembl
GRCm381689,487,374 - 89,487,952 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,487,379 - 89,487,952 (-)EnsemblGRCm38mm10GRCm38
MGSCv371689,487,619 - 89,488,197 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361689,376,581 - 89,376,766 (-)NCBIMGSCv36mm8
Celera1689,686,648 - 89,687,226 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
Krtap8-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,204,006 - 42,204,563 (-)NCBIGRCr8
mRatBN7.21128,717,798 - 28,718,355 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,718,125 - 28,718,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1137,397,252 - 37,397,809 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01130,097,280 - 30,097,837 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01129,266,927 - 29,267,484 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01129,618,650 - 29,618,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,618,672 - 29,618,857 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01133,240,365 - 33,240,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,276,201 - 29,276,386 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1128,410,114 - 28,410,405 (-)NCBICelera
Cytogenetic Map11q11NCBI
LOC102011504
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540730,527,795 - 30,527,986 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540730,527,468 - 30,528,014 (-)NCBIChiLan1.0ChiLan1.0
LOC100995494
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22226,927,015 - 26,938,884 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12121,785,686 - 21,786,458 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02117,176,613 - 17,188,482 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12130,560,480 - 30,561,066 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2130,560,812 - 30,561,003 (-)Ensemblpanpan1.1panPan2
KRTAP8-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13125,810,491 - 25,811,046 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3125,810,799 - 25,810,990 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3125,800,943 - 25,801,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03125,925,616 - 25,926,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3125,925,922 - 25,926,113 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13125,873,083 - 25,873,620 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03125,884,682 - 25,885,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03126,352,743 - 26,353,280 (-)NCBIUU_Cfam_GSD_1.0
LOC100626387
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13194,437,473 - 194,437,652 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113194,437,168 - 194,437,692 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213204,835,744 - 204,836,258 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRTAP8-1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1261,310,931 - 61,312,908 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl261,312,383 - 61,312,574 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660713,863,449 - 3,864,152 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101711257
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474519,287,816 - 19,288,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026192   ⟹   ENSSTOP00000023668
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650011,077,375 - 11,077,560 (+)Ensembl
RefSeq Acc Id: XM_040287191   ⟹   XP_040143125
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497126,389,915 - 26,390,475 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040143125 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023668.2
GenBank Protein KAG3283855 (Get FASTA)   NCBI Sequence Viewer  
  KAG3283856 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040143125   ⟸   XM_040287191
- UniProtKB: I3NH21 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000023668   ⟸   ENSSTOT00000026192


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026383 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026192.2 UniProtKB/TrEMBL
InterPro KRTAP8-1 UniProtKB/TrEMBL
  KRTAP_type6/8/16/19/20/21 UniProtKB/TrEMBL
NCBI Gene LOC101961052 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 8-1 UniProtKB/TrEMBL
  PTHR36131 UniProtKB/TrEMBL
Pfam KRTAP UniProtKB/TrEMBL
UniProt I3NH21 ENTREZGENE, UniProtKB/TrEMBL