Efnb2 (ephrin B2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Efnb2 (ephrin B2) Ictidomys tridecemlineatus
Analyze
Symbol: Efnb2
Name: ephrin B2
RGD ID: 12463137
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN adherens junction organization (ortholog); animal organ morphogenesis (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH irritable bowel syndrome (ortholog); Liver Neoplasms (ortholog); Lung Agenesis (ortholog); FOUND IN glutamatergic synapse (ortholog); integral component of postsynaptic density membrane (ortholog); integral component of presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ephrin-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945190,770,785 - 190,813,404 (-)NCBI
SpeTri2.0NW_0049364725,138,751 - 5,181,630 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Efnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945190,770,785 - 190,813,404 (-)NCBI
SpeTri2.0NW_0049364725,138,751 - 5,181,630 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl13106,489,745 - 106,535,662 (-)EnsemblGRCh38hg38GRCh38
GRCh3813106,489,745 - 106,535,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713107,142,093 - 107,188,010 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613105,940,094 - 105,985,338 (-)NCBINCBI36hg18NCBI36
Build 3413105,940,097 - 105,985,338NCBI
Celera1387,986,327 - 88,031,570 (-)NCBI
Cytogenetic Map13q33.3NCBI
HuRef1387,733,581 - 87,778,804 (-)NCBIHuRef
CHM1_113107,110,751 - 107,156,066 (-)NCBICHM1_1
Efnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3988,667,235 - 8,711,242 (-)NCBIGRCm39mm39
GRCm39 Ensembl88,667,434 - 8,711,242 (-)Ensembl
GRCm3888,617,235 - 8,661,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl88,617,434 - 8,661,242 (-)EnsemblGRCm38mm10GRCm38
MGSCv3788,617,439 - 8,660,773 (-)NCBIGRCm37mm9NCBIm37
MGSCv3688,617,406 - 8,660,745 (-)NCBImm8
Celera88,790,063 - 8,833,410 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map83.42NCBI
Efnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21680,783,389 - 80,827,420 (+)NCBI
Rnor_6.0 Ensembl1686,631,064 - 86,675,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01686,631,151 - 86,672,050 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01686,044,304 - 86,085,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41686,187,639 - 86,228,023 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11686,173,265 - 86,214,062 (+)NCBI
Celera1678,561,525 - 78,602,409 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Efnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554045,000,906 - 5,030,126 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554045,000,906 - 5,030,068 (+)NCBIChiLan1.0ChiLan1.0
EFNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113106,770,296 - 106,815,542 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13106,770,296 - 106,815,548 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01387,629,831 - 87,675,652 (-)NCBIMhudiblu_PPA_v0panPan3
EFNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12255,567,992 - 55,609,210 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2255,566,039 - 55,609,443 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2255,325,721 - 55,366,922 (-)NCBI
ROS_Cfam_1.02256,079,969 - 56,121,281 (-)NCBI
UMICH_Zoey_3.12255,672,831 - 55,714,054 (-)NCBI
UNSW_CanFamBas_1.02255,659,581 - 55,700,849 (-)NCBI
UU_Cfam_GSD_1.02255,698,309 - 55,739,598 (-)NCBI
EFNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1174,186,640 - 74,233,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11174,188,337 - 74,232,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21181,565,082 - 81,609,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNB2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1384,904,421 - 84,949,292 (-)NCBI
ChlSab1.1 Ensembl384,904,435 - 84,949,465 (-)Ensembl
Vero_WHO_p1.0NW_02366604641,467,321 - 41,512,883 (-)NCBI
Efnb2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247935,089,675 - 5,130,022 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005316995   ⟹   XP_005317052
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945190,770,785 - 190,813,404 (-)NCBI
SpeTri2.0NW_0049364725,138,751 - 5,181,630 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040281712   ⟹   XP_040137646
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945190,770,785 - 190,813,404 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005317052 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137646 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3293373 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005317052   ⟸   XM_005316995
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040137646   ⟸   XM_040281712
- Peptide Label: isoform X2
Protein Domains
Ephrin RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007085 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006329 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007082 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.420 UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/TrEMBL
  Ephrin UniProtKB/TrEMBL
  Ephrin-B_Ecto UniProtKB/TrEMBL
  Ephrin_CS UniProtKB/TrEMBL
  Ephrin_RBD UniProtKB/TrEMBL
NCBI Gene Efnb2 ENTREZGENE
PANTHER PTHR11304 UniProtKB/TrEMBL
Pfam Ephrin UniProtKB/TrEMBL
PRINTS EPHRIN UniProtKB/TrEMBL
PROSITE EPHRIN_RBD_1 UniProtKB/TrEMBL
  EPHRIN_RBD_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49503 UniProtKB/TrEMBL
UniProt I3M930_ICTTR UniProtKB/TrEMBL