Pde10a (phosphodiesterase 10A) - Rat Genome Database

Name: Pde10a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pde10a (phosphodiesterase 10A) Ictidomys tridecemlineatus

Analyze

Symbol:

Pde10a

Name:

phosphodiesterase 10A

RGD ID:

12461691

Description:

ENCODES a protein that exhibits cAMP binding (ortholog); cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of cAMP-mediated signaling (ortholog); negative regulation of cGMP-mediated signaling (ortholog); regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Infantile-Onset Limb and Orofacial Dyskinesia (ortholog); FOUND IN glutamatergic synapse (ortholog); neuronal cell body (ortholog); perikaryon (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDE10A (phosphodiesterase 10A)	NCBI	Ortholog
Mus musculus (house mouse):	Pde10a (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pde10a (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pde10a (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDE10A (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDE10A (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDE10A (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDE10A (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pde10a (phosphodiesterase 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	148,143,922 - 148,659,124 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	15,400,629 - 15,671,600 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	15,401,248 - 15,671,594 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

genetic disease (ISO)

Infantile-Onset Limb and Orofacial Dyskinesia (ISO)

Muscle Hypotonia (ISO)

Striatal Degeneration, Autosomal Dominant 2 (ISO)

traumatic brain injury (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cAMP-mediated signaling (ISO)

negative regulation of cGMP-mediated signaling (IEA,ISO)

regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (ISO)

regulation of protein kinase A signaling (ISO)

signal transduction (IEA)

Cellular Component

glutamatergic synapse (ISO)

neuronal cell body (ISO)

perikaryon (ISO)

synapse (ISO)

Molecular Function

3',5'-cyclic-nucleotide phosphodiesterase activity (IEA)

cAMP binding (ISO)

cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (IEA)

cyclic-nucleotide phosphodiesterase activity (ISO)

hydrolase activity (IEA)

metal ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

adenine phoshoribosyltransferase deficiency pathway (ISO)

adenosine monophosphate deaminase deficiency pathway (ISO)

adenylosuccinate lyase deficiency pathway (ISO)

AICA-ribosuria pathway (ISO)

azathioprine pharmacodynamics pathway (ISO)

Kelley-Seegmiller syndrome pathway (ISO)

Lesch-Nyhan syndrome pathway (ISO)

mercaptopurine pharmacodynamics pathway (ISO)

molybdenum cofactor deficiency pathway (ISO)

protein kinase A (PKA) signaling pathway (ISO)

purine metabolic pathway (ISO)

purine nucleoside phosphorylase deficiency pathway (ISO)

tioguanine pharmacodynamics pathway (ISO)

xanthinuria type I pathway (ISO)

xanthinuria pathway (ISO)

xanthinuria type II pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pde10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	148,143,922 - 148,659,124 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	15,400,629 - 15,671,600 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	15,401,248 - 15,671,594 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDE10A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	165,327,289 - 165,988,052 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	165,327,287 - 165,988,117 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	165,740,778 - 166,076,729 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	165,664,519 - 165,995,574 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	165,714,945 - 166,045,996	NCBI
Celera	6	166,478,886 - 166,814,271 (-)	NCBI		Celera
Cytogenetic Map	6	q27	NCBI
HuRef	6	163,202,267 - 163,537,621 (-)	NCBI		HuRef
CHM1_1	6	166,003,719 - 166,338,432 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	166,693,362 - 167,356,384 (-)	NCBI		T2T-CHM13v2.0

Pde10a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	8,742,719 - 9,205,480 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	8,744,204 - 9,205,480 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	8,525,187 - 8,986,648 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	8,525,372 - 8,986,648 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	8,994,610 - 9,179,513 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	8,639,919 - 8,824,822 (+)	NCBI		MGSCv36	mm8
Celera	17	8,848,994 - 9,030,858 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	4.96	NCBI

Pde10a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	54,313,343 - 54,765,668 (-)	NCBI		GRCr8
mRatBN7.2	1	51,765,743 - 52,218,086 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	51,770,132 - 52,216,563 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	52,476,016 - 52,919,928 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	58,463,473 - 58,911,420 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	52,551,592 - 52,995,519 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	52,360,296 - 52,544,448 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	52,360,296 - 52,544,450 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	53,617,430 - 53,800,479 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	46,392,900 - 46,589,076 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	46,395,844 - 46,592,020 (-)	NCBI
Celera	1	47,539,418 - 47,723,290 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

Pde10a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	16,114,530 - 16,365,146 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	16,114,530 - 16,370,648 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDE10A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	185,514,841 - 186,181,000 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	183,411,044 - 184,076,963 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	163,274,252 - 163,612,749 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	168,259,978 - 168,596,401 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	168,265,707 - 168,645,231 (-)	Ensembl	panpan1.1		panPan2

PDE10A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	53,457,781 - 54,049,735 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	53,462,979 - 53,801,966 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	54,243,884 - 54,542,326 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	53,634,410 - 54,231,358 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	53,639,079 - 53,984,940 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	53,531,754 - 53,830,179 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	53,379,457 - 53,678,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	54,012,303 - 54,310,827 (-)	NCBI		UU_Cfam_GSD_1.0

PDE10A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	2,829,411 - 3,392,651 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	3,120,418 - 3,394,236 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	4,618,673 - 4,742,489 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDE10A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	93,012,027 - 93,684,349 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	93,020,696 - 93,344,369 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	64,833,189 - 65,491,475 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pde10a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	13,497,495 - 13,880,345 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624785	13,208,518 - 13,885,261 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013356933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001954 ⟹ ENSSTOP00000001742

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936489	15,401,398 - 15,671,600 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000030405 ⟹ ENSSTOP00000032236

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936489	15,401,398 - 15,556,463 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037497 ⟹ ENSSTOP00000025384

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936489	15,401,398 - 15,555,880 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040928 ⟹ ENSSTOP00000025429

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936489	15,400,629 - 15,555,454 (-)	Ensembl

RefSeq Acc Id:

XM_013356933 ⟹ XP_013212387

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,419,601 (-)	NCBI
SpeTri2.0	NW_004936489	15,401,248 - 15,671,594 (-)	NCBI

Sequence:

show sequence

CCGCTTCTCTTCGGCTCCGACATGGAAGATGGACCTTCTAATAACGCGAGCTGCTTCCGAAGGC
TGACCGAGTGTTTCCTGAGCCCTAGTTTGACAGATGAAAAAGTGAAGGCGTATCTTTCTCTTCA
CCCCCAGGTATTAGATGAGTTTGTGTCTGAAAGTGTCAGTGCAGAGACAGTAGAAAAATGGCTG
AAGAGGAAAAACAATAAAATAGAAGATGAATCAGCTCCTAAGGAAGTCAGCAGGTACCAAGATA
CCAATATGCAGGGAGTCGTGTATGAACTGAACAGCTATATTGAACAGCGGTTGGACACAGGAGG
AGACAACCAGTTGCTCCTCTATGAATTGAGTAGCATAATCAAAATAGCCACAAAAGCTGATGGA
TTTGCACTGTATTTCCTTGGAGAGTGCAATAATAGTCTGTGTGTGTTCACACCACCTGGGATAA
AGGAAGGAAAACCCCGACTCATCCCTGCCGGGCCCATTACCCAGGGCACCACCATCTCTGCTTA
TGTGGCCAAGTCCAGGAAAACACTGCTTGTAGAGGACATCCTTGGGGATGAACGATTCCCAAGA
GGTACTGGACTGGAATCAGGGACTCGCATCCAGTCTGTTCTCTGCTTGCCAATTGTCACTGCGA
TTGGTGATTTGATTGGTATTCTTGAGCTCTATCGGCACTGGGGCAAGGAAGCCTTCTGCCTCAG
TCATCAGGAGGTTGCAACAGCAAATCTTGCCTGGGCTTCAGTAGCAATACATCAGGTGCAGGTG
TGCAGAGGTCTTGCAAAACAGACTGAATTGAATGACTTTCTCCTCGATGTATCAAAAACATATT
TTGATAATATAGTCGCAATAGATTCTCTACTTGAACACATCATGATATATGCAAAAAACCTGGT
GAATGCCGATCGTTGTGCACTCTTCCAGGTAGACCATAAGAACAAGGAATTGTATTCAGATCTT
TTTGATATTGGAGAGGAAAAGGAAGGAAAGCCTGTCTTCAAGAAGACCAAAGAGATAAGATTTT
CAATCGAGAAAGGAATCGCTGGTCAAGTAGCAAGAACAGGGGAAGTCCTGAACATTCCAGATGC
CTATGCGGATCCACGCTTCAACAGGGAGGTGGACTTGTACACAGGCTACACTACCCGCAACATC
CTGTGCATGCCCATCGTGAGTCGGGGGAGTGTGATAGGCGTGGTGCAGATGGTGAACAAAATCA
GCGGCAGTGCCTTCTCCAAGACCGACGAGAACAACTTCAAAATGTTCGCTGTCTTCTGTGCTTT
GGCCTTACACTGTGCTAATATGTATCATCGAATCCGGCACTCAGAGTGCATCTACCGGGTAACC
ATGGAAAAGCTGTCCTACCACAGCATTTGCACTGCTGAGGAGTGGCAAGGCCTCATGCGCTTCA
ACCTCCCTATGCGGCTCTGCAAAGAAATTGAGCTGTTCCACTTTGACATTGGTCCTTTTGAAAG
CATGTGGCCTGGGATCTTTGTCTACATGGTTCATCGGTCCTGTGGGACGTCCTGCTTTGAGCTT
GAAAAGTTGTGTCGTTTCATTATGTCTGTGAAGAAGAACTACCGACGGGTTCCTTACCACAACT
GGAAGCATGCGGTCACAGTGGCACACTGCATGTATGCCATATTGCAGAACAATTATGGGCTCTT
CACAGACCTCGAGCGTAAAGGACTGCTGATCGCCTGTCTGTGTCATGACCTGGACCACAGGGGC
TTCAGTAACAGCTACCTGCAGAAGTTCGACCACCCACTGGCAGCTCTCTACTCCACCTCTACCA
TGGAGCAGCACCACTTCTCCCAGACAGTGTCCATCCTGCAGTTGGAAGGGCACAATATCTTCTC
CACCCTGAGCTCCAGTGAGTACGAGCAGGTGCTGGAGATCATCCGCAAAGCCATCATCGCCACT
GACCTTGCCCTTTACTTTGGGAACAGGAAACAGTTGGAAGAGATGTACCAGACTGGATCTCTAA
ATCTCCATAATCAGTCGCATAGAGACCGTGTAATTGGTTTGATGATGACTGCCTGTGATCTTTG
CTCTGTGACAAAACTGTGGCCAGTTACAAAATTGACAGCAAATGATATATATGCAGAATTCTGG
GCTGAGGGCGATGAAATGAAGAAATTGGGAATACAGCCAATCCCTATGATGGACAGAGACAAGA
AGGATGAAGTCCCTCAGGGGCAGCTTGGGTTCTACAATGCTGTGGCCATTCCCTGCTACACCAC
GCTGACCCAGATCCTCCCCCCGACAGAGCCTCTGCTGAAAGCATGCAGGGATAACCTCAGTCAG
TGGGAGAAGGTGATCCGAGGAGAGGAGAGTGCCCAGTGGATCTCAGCCTCGCCAGCGGCCCCAG
AGACCTCTGAGAAGCCACCCGTGAAGACTGATGGCTGACAGCAGGGCCAGTCGTCCCACCAGCG
AGTCTCATCTTGCTTCTTTGACTTTTTTCCTTTTATTTTTGAGGGGGGAAAACCTACACCTGGT
AGCTGGGGTGGAAACCTTGGAGAAGCTGATGTCAAGCGTGTGTGTGCAAGCAGACGACTT

hide sequence

RefSeq Acc Id:

XM_040283542 ⟹ XP_040139476

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,657,998 (-)	NCBI

RefSeq Acc Id:

XM_040283543 ⟹ XP_040139477

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,924 - 148,659,124 (-)	NCBI

RefSeq Acc Id:

XM_040283544 ⟹ XP_040139478

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,419,607 (-)	NCBI

RefSeq Acc Id:

XM_040283545 ⟹ XP_040139479

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,370,133 (-)	NCBI

RefSeq Acc Id:

XM_040283546 ⟹ XP_040139480

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,657,996 (-)	NCBI

RefSeq Acc Id:

XM_040283547 ⟹ XP_040139481

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,324,084 (-)	NCBI

RefSeq Acc Id:

XM_040283548 ⟹ XP_040139482

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,412,876 (-)	NCBI

RefSeq Acc Id:

XM_040283550 ⟹ XP_040139484

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,152,277 - 148,658,000 (-)	NCBI

RefSeq Acc Id:

XM_040283551 ⟹ XP_040139485

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,924 - 148,659,124 (-)	NCBI

RefSeq Acc Id:

XM_040283552 ⟹ XP_040139486

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,370,132 (-)	NCBI

RefSeq Acc Id:

XM_040283553 ⟹ XP_040139487

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,275,712 (-)	NCBI

RefSeq Acc Id:

XM_040283554 ⟹ XP_040139488

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	148,143,922 - 148,303,457 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013212387	(Get FASTA)	NCBI Sequence Viewer
	XP_040139476	(Get FASTA)	NCBI Sequence Viewer
	XP_040139477	(Get FASTA)	NCBI Sequence Viewer
	XP_040139478	(Get FASTA)	NCBI Sequence Viewer
	XP_040139479	(Get FASTA)	NCBI Sequence Viewer
	XP_040139480	(Get FASTA)	NCBI Sequence Viewer
	XP_040139481	(Get FASTA)	NCBI Sequence Viewer
	XP_040139482	(Get FASTA)	NCBI Sequence Viewer
	XP_040139484	(Get FASTA)	NCBI Sequence Viewer
	XP_040139485	(Get FASTA)	NCBI Sequence Viewer
	XP_040139486	(Get FASTA)	NCBI Sequence Viewer
	XP_040139487	(Get FASTA)	NCBI Sequence Viewer
	XP_040139488	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001742.3
	ENSSTOP00000025384.1
	ENSSTOP00000025429.1
	ENSSTOP00000032236.1
GenBank Protein	KAG3290554	(Get FASTA)	NCBI Sequence Viewer
	KAG3290555	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013212387 ⟸ XM_013356933
- Peptide Label:	isoform X6
- UniProtKB:	I3LZH9 (UniProtKB/TrEMBL), A0A287CVY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDGPSNNASCFRRLTECFLSPSLTDEKVKAYLSLHPQVLDEFVSESVSAETVEKWLKRKNNKI EDESAPKEVSRYQDTNMQGVVYELNSYIEQRLDTGGDNQLLLYELSSIIKIATKADGFALYFLG ECNNSLCVFTPPGIKEGKPRLIPAGPITQGTTISAYVAKSRKTLLVEDILGDERFPRGTGLESG TRIQSVLCLPIVTAIGDLIGILELYRHWGKEAFCLSHQEVATANLAWASVAIHQVQVCRGLAKQ TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEK EGKPVFKKTKEIRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVS RGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHSECIYRVTMEKLSYH SICTAEEWQGLMRFNLPMRLCKEIELFHFDIGPFESMWPGIFVYMVHRSCGTSCFELEKLCRFI MSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNYGLFTDLERKGLLIACLCHDLDHRGFSNSYLQ KFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFG NRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMK KLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDNLSQWEKVIRG EESAQWISASPAAPETSEKPPVKTDG hide sequence

RefSeq Acc Id:	XP_040139476 ⟸ XM_040283542
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139480 ⟸ XM_040283546
- Peptide Label:	isoform X3
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139478 ⟸ XM_040283544
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DF97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139482 ⟸ XM_040283548
- Peptide Label:	isoform X5
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139479 ⟸ XM_040283545
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DF97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139486 ⟸ XM_040283552
- Peptide Label:	isoform X9
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139481 ⟸ XM_040283547
- Peptide Label:	isoform X4
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139488 ⟸ XM_040283554
- Peptide Label:	isoform X10
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139487 ⟸ XM_040283553
- Peptide Label:	isoform X10
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139485 ⟸ XM_040283551
- Peptide Label:	isoform X8
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139477 ⟸ XM_040283543
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DF97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139484 ⟸ XM_040283550
- Peptide Label:	isoform X7
- UniProtKB:	A0A287CVY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000001742 ⟸ ENSSTOT00000001954

RefSeq Acc Id:

ENSSTOP00000025384 ⟸ ENSSTOT00000037497

RefSeq Acc Id:

ENSSTOP00000032236 ⟸ ENSSTOT00000030405

RefSeq Acc Id:

ENSSTOP00000025429 ⟸ ENSSTOT00000040928

Protein Domains

PDEase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001947	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001954.3	UniProtKB/TrEMBL
	ENSSTOT00000030405.1	UniProtKB/TrEMBL
	ENSSTOT00000037497.1	UniProtKB/TrEMBL
	ENSSTOT00000040928.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1300.10	UniProtKB/TrEMBL
	3.30.450.40	UniProtKB/TrEMBL
InterPro	GAF	UniProtKB/TrEMBL
	GAF-like_dom_sf	UniProtKB/TrEMBL
	HD/PDEase_dom	UniProtKB/TrEMBL
	PDEase	UniProtKB/TrEMBL
	PDEase_catalytic_dom	UniProtKB/TrEMBL
	PDEase_catalytic_dom_sf	UniProtKB/TrEMBL
	PDEase_CS	UniProtKB/TrEMBL
NCBI Gene	Pde10a	ENTREZGENE
PANTHER	CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE 10A	UniProtKB/TrEMBL
	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	UniProtKB/TrEMBL
Pfam	GAF	UniProtKB/TrEMBL
	PDEase_I	UniProtKB/TrEMBL
PRINTS	PDIESTERASE1	UniProtKB/TrEMBL
PROSITE	PDEASE_I_1	UniProtKB/TrEMBL
	PDEASE_I_2	UniProtKB/TrEMBL
SMART	GAF	UniProtKB/TrEMBL
	HDc	UniProtKB/TrEMBL
Superfamily-SCOP	GAF domain-like	UniProtKB/TrEMBL
	HD-domain/PDEase-like	UniProtKB/TrEMBL
UniProt	A0A287CVT7_ICTTR	UniProtKB/TrEMBL
	A0A287CVY3	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DF97	ENTREZGENE, UniProtKB/TrEMBL
	I3LZH9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

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Imported Annotations - SMPDB