Gspt2 (G1 to S phase transition 2) - Rat Genome Database

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Gene: Gspt2 (G1 to S phase transition 2) Ictidomys tridecemlineatus
Analyze
Symbol: Gspt2
Name: G1 to S phase transition 2
RGD ID: 12461545
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN regulation of translational termination (inferred); translational termination (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Stocco Dos Santos type X-linked intellectual disability (ortholog); FOUND IN cytosolic ribosome (inferred); translation release factor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eukaryotic peptide chain release factor GTP-binding subunit ERF3B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X37,221,623 - 37,224,163 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936909436,018 - 438,651 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936909436,004 - 438,818 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gspt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X37,221,623 - 37,224,163 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936909436,018 - 438,651 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936909436,004 - 438,818 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSPT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X51,743,442 - 51,746,232 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX51,743,442 - 51,746,232 (+)EnsemblGRCh38hg38GRCh38
GRCh37X51,486,538 - 51,489,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X51,503,267 - 51,505,769 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X51,319,562 - 51,322,065NCBI
CeleraX56,241,885 - 56,244,732 (-)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX48,925,476 - 48,928,323 (+)NCBIHuRef
CHM1_1X51,560,357 - 51,563,204 (+)NCBICHM1_1
T2T-CHM13v2.0X51,015,099 - 51,017,889 (+)NCBIT2T-CHM13v2.0
Gspt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,679,675 - 93,682,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX93,679,675 - 93,686,850 (+)EnsemblGRCm39 Ensembl
GRCm38X94,636,069 - 94,638,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,636,069 - 94,643,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X91,881,408 - 91,883,901 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X90,888,788 - 90,891,281 (+)NCBIMGSCv36mm8
CeleraX81,563,638 - 81,566,131 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.63NCBI
Gspt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,582,649 - 63,597,467 (+)NCBIGRCr8
mRatBN7.2X59,587,237 - 59,589,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,587,276 - 59,594,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX61,041,357 - 61,043,878 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,542,488 - 64,545,009 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X62,122,571 - 62,125,092 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X63,959,131 - 63,961,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,954,727 - 63,961,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X64,865,560 - 64,868,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X82,269,814 - 82,272,335 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX60,014,268 - 60,016,789 (+)NCBICelera
Cytogenetic MapXq22NCBI
Gspt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555432,879,974 - 2,882,473 (-)NCBIChiLan1.0ChiLan1.0
GSPT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X53,129,537 - 53,135,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X53,133,134 - 53,138,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X43,939,890 - 43,942,733 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X51,833,651 - 51,836,492 (+)NCBIpanpan1.1PanPan1.1panPan2
GSPT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X44,319,042 - 44,321,615 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX44,319,314 - 44,321,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X44,445,193 - 44,447,762 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX44,445,231 - 44,447,751 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X44,275,384 - 44,277,953 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X44,445,664 - 44,448,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X44,674,822 - 44,677,391 (+)NCBIUU_Cfam_GSD_1.0
GSPT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX45,193,338 - 45,195,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X45,193,336 - 45,195,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X50,566,493 - 50,569,069 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSPT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X48,463,262 - 48,466,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX48,463,500 - 48,465,386 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660862,192,722 - 2,195,568 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gspt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248933,730,845 - 3,733,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248933,730,830 - 3,733,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000008538   ⟹   ENSSTOP00000023642
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936909436,018 - 438,651 (+)Ensembl
RefSeq Acc Id: XM_005341912   ⟹   XP_005341969
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X37,221,623 - 37,224,163 (-)NCBI
SpeTri2.0NW_004936909436,004 - 438,818 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013806.3
  ENSSTOP00000023642.1
GenBank Protein KAG3272133 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341969   ⟸   XM_005341912
- UniProtKB: I3NGZ5 (UniProtKB/TrEMBL),   I3MPQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000023642   ⟸   ENSSTOT00000008538
Protein Domains
tr-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008532 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000015406 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008538.3 UniProtKB/TrEMBL
  ENSSTOT00000015416.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro Ataxin-2_C UniProtKB/TrEMBL
  EFTu-like_2 UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  T_Tr_GTP-bd_dom UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_C UniProtKB/TrEMBL
NCBI Gene Gspt2 ENTREZGENE
PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A UniProtKB/TrEMBL
  EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3B UniProtKB/TrEMBL
  TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
  GTP_EFTU_D3 UniProtKB/TrEMBL
  PAM2 UniProtKB/TrEMBL
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE G_TR_1 UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
  SSF50465 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt I3MPQ0 ENTREZGENE, UniProtKB/TrEMBL
  I3NGZ5 ENTREZGENE, UniProtKB/TrEMBL