Nectin1 (nectin cell adhesion molecule 1) - Rat Genome Database

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Gene: Nectin1 (nectin cell adhesion molecule 1) Ictidomys tridecemlineatus
Analyze
Symbol: Nectin1
Name: nectin cell adhesion molecule 1
RGD ID: 12461293
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN axon guidance (ortholog); camera-type eye morphogenesis (ortholog); cell-cell adhesion (ortholog); ASSOCIATED WITH cleft lip (ortholog); cleft lip-palate-ectodermal dysplasia syndrome (ortholog); cleft palate (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nectin cell adhesion molecule 1, transcript variant X1; nectin cell adhesion molecule 1, transcript variant X2; nectin cell adhesion molecule 1, transcript variant X3; nectin cell adhesion molecule 1, transcript variant X4; nectin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,579,611 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,501,081 - 4,602,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Nectin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,579,611 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,501,081 - 4,602,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECTIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11119,623,408 - 119,729,200 (-)EnsemblGRCh38hg38GRCh38
GRCh3811119,638,098 - 119,729,200 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711119,508,808 - 119,599,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611119,014,018 - 119,104,645 (-)NCBINCBI36hg18NCBI36
Build 3411119,050,309 - 119,104,645NCBI
Celera11116,669,897 - 116,760,980 (-)NCBI
Cytogenetic Map11q23.3NCBI
HuRef11115,451,054 - 115,541,412 (-)NCBIHuRef
CHM1_111119,396,685 - 119,487,290 (-)NCBICHM1_1
Nectin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,655,251 - 43,718,758 (+)NCBIGRCm39mm39
GRCm39 Ensembl943,655,281 - 43,743,955 (+)Ensembl
GRCm38943,737,075 - 43,807,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl943,743,984 - 43,832,658 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl943,743,984 - 43,807,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,552,659 - 43,615,544 (+)NCBIGRCm37mm9NCBIm37
MGSCv36943,495,571 - 43,558,456 (+)NCBImm8
Celera941,000,673 - 41,063,599 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
Nectin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2844,101,776 - 44,164,863 (+)NCBI
Rnor_6.0 Ensembl848,094,673 - 48,157,305 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0848,094,233 - 48,198,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0846,714,981 - 46,777,484 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4846,739,657 - 46,799,051 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1846,807,104 - 46,807,754 (+)NCBI
Celera843,690,971 - 43,754,034 (+)NCBICelera
Cytogenetic Map8q22NCBI
Nectin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,682,861 - 20,745,069 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,683,007 - 20,745,069 (-)NCBIChiLan1.0ChiLan1.0
NECTIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111118,425,181 - 118,493,090 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,401,321 - 118,493,090 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011114,497,177 - 114,565,338 (-)NCBIMhudiblu_PPA_v0panPan3
NECTIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,228,197 - 14,292,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,228,197 - 14,315,060 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,282,464 - 14,346,907 (+)NCBI
ROS_Cfam_1.0514,172,083 - 14,236,744 (+)NCBI
UMICH_Zoey_3.1514,310,592 - 14,375,074 (+)NCBI
UNSW_CanFamBas_1.0514,214,689 - 14,278,846 (+)NCBI
UU_Cfam_GSD_1.0514,254,410 - 14,319,094 (+)NCBI
NECTIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,789,726 - 46,891,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,823,552 - 46,891,564 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,881,267 - 51,894,114 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NECTIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11111,046,310 - 111,116,906 (-)NCBI
ChlSab1.1 Ensembl1111,046,333 - 111,116,698 (-)Ensembl
Vero_WHO_p1.0NW_02366604314,924,098 - 14,989,691 (+)NCBI
Nectin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,997,533 - 15,058,971 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328378   ⟹   XP_005328435
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,618,840 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,540,265 - 4,602,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728490   ⟹   XP_021584165
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,579,611 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,501,081 - 4,602,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728491   ⟹   XP_021584166
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,589,308 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,509,688 - 4,602,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728492   ⟹   XP_021584167
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,579,611 - 101,680,935 (-)NCBI
SpeTri2.0NW_0049365424,501,081 - 4,602,338 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005328435   ⟸   XM_005328378
- Peptide Label: isoform X1
- UniProtKB: I3NGI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584167   ⟸   XM_021728492
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021584165   ⟸   XM_021728490
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021584166   ⟸   XM_021728491
- Peptide Label: isoform X3
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029172 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000023479 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029515 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Nectin-1_Ig1 UniProtKB/TrEMBL
  Nectin-1_Ig2 UniProtKB/TrEMBL
  Nectin1 UniProtKB/TrEMBL
NCBI Gene Nectin1 ENTREZGENE
PANTHER PTHR23277:SF69 UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3NGI2 ENTREZGENE, UniProtKB/TrEMBL