Copb1 (COPI coat complex subunit beta 1) - Rat Genome Database

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Gene: Copb1 (COPI coat complex subunit beta 1) Ictidomys tridecemlineatus
Analyze
Symbol: Copb1
Name: COPI coat complex subunit beta 1 (Ensembl:coatomer protein complex subunit beta 1)
RGD ID: 12461264
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); intra-Golgi vesicle-mediated transport (inferred); intracellular protein transport (inferred); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH Baralle-Macken Syndrome (ortholog); cataract (ortholog); genetic disease (ortholog); FOUND IN Golgi-associated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coatomer protein complex subunit beta 1; coatomer subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494748,177,736 - 48,215,118 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365284,211,304 - 4,249,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365284,211,670 - 4,249,103 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Copb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494748,177,736 - 48,215,118 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365284,211,304 - 4,249,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365284,211,670 - 4,249,103 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,457,512 - 14,499,811 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,443,440 - 14,500,027 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,479,058 - 14,521,357 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,435,629 - 14,477,974 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,435,628 - 14,477,974NCBI
Celera1114,604,116 - 14,646,512 (-)NCBICelera
Cytogenetic Map11p15.2NCBI
HuRef1114,160,118 - 14,202,574 (-)NCBIHuRef
CHM1_11114,477,945 - 14,520,379 (-)NCBICHM1_1
T2T-CHM13v2.01114,552,800 - 14,595,086 (-)NCBIT2T-CHM13v2.0
Copb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397113,814,794 - 113,853,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7113,814,794 - 113,853,946 (-)EnsemblGRCm39 Ensembl
GRCm387114,215,559 - 114,254,680 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7114,215,559 - 114,254,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv377121,359,073 - 121,398,194 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367114,006,740 - 114,045,861 (-)NCBIMGSCv36mm8
Celera7114,176,778 - 114,215,841 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map759.31NCBI
Copb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,838,751 - 177,876,688 (-)NCBIGRCr8
mRatBN7.21168,404,334 - 168,438,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,404,335 - 168,438,416 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,733,748 - 176,767,845 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,919,820 - 183,953,917 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01176,633,720 - 176,667,908 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,695,480 - 183,729,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,695,481 - 183,729,569 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,670,320 - 190,704,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,199,676 - 172,233,765 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,335,785 - 172,369,874 (-)NCBI
Celera1166,256,866 - 166,290,951 (-)NCBICelera
Cytogenetic Map1q34NCBI
Copb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541429,624,316 - 29,661,453 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541429,626,314 - 29,661,453 (-)NCBIChiLan1.0ChiLan1.0
COPB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2916,838,789 - 16,881,130 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,801,169 - 16,841,970 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01114,560,239 - 14,602,557 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11114,251,699 - 14,293,887 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1114,251,699 - 14,293,850 (-)Ensemblpanpan1.1panPan2
COPB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12137,186,380 - 37,224,549 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2137,186,424 - 37,224,519 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2136,688,155 - 36,726,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02138,074,811 - 38,112,883 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2138,074,436 - 38,112,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12137,325,236 - 37,362,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02137,510,781 - 37,548,608 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02137,792,381 - 37,830,219 (-)NCBIUU_Cfam_GSD_1.0
COPB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl244,761,013 - 44,799,099 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1244,761,072 - 44,799,063 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2248,067,748 - 48,078,675 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2247,986,993 - 48,009,785 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1150,380,971 - 50,426,019 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl150,380,892 - 50,425,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038147,924,436 - 147,969,501 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Copb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247666,335,063 - 6,376,637 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247666,329,528 - 6,376,725 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006247   ⟹   ENSSTOP00000005585
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365284,211,304 - 4,249,176 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000040056   ⟹   ENSSTOP00000027395
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365284,211,304 - 4,249,176 (+)Ensembl
RefSeq Acc Id: XM_005326777   ⟹   XP_005326834
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494748,177,736 - 48,215,118 (+)NCBI
SpeTri2.0NW_0049365284,211,670 - 4,249,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284712   ⟹   XP_040140646
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494748,178,244 - 48,215,118 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005326834 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140646 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005585.2
  ENSSTOP00000027395.1
GenBank Protein KAG3285677 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326834   ⟸   XM_005326777
- UniProtKB: I3M7I8 (UniProtKB/TrEMBL),   A0A287D1L8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140646   ⟸   XM_040284712
- UniProtKB: I3M7I8 (UniProtKB/TrEMBL),   A0A287D1L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000027395   ⟸   ENSSTOT00000040056
RefSeq Acc Id: ENSSTOP00000005585   ⟸   ENSSTOT00000006247
Protein Domains
Clathrin/coatomer adaptor adaptin-like N-terminal   Coatomer beta subunit appendage platform   Coatomer beta subunit C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006213 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006247.3 UniProtKB/TrEMBL
  ENSSTOT00000040056.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/TrEMBL
  Coatomer_bsu_C UniProtKB/TrEMBL
  COPB1 UniProtKB/TrEMBL
  COPB1_appendage_platform_dom UniProtKB/TrEMBL
NCBI Gene Copb1 ENTREZGENE
PANTHER COATOMER SUBUNIT BETA UniProtKB/TrEMBL
  PTHR10635 UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/TrEMBL
  Coatamer_beta_C UniProtKB/TrEMBL
  Coatomer_b_Cpla UniProtKB/TrEMBL
PIRSF Coatomer_beta_subunit UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A287D1L8 ENTREZGENE, UniProtKB/TrEMBL
  I3M7I8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-27 Copb1  COPI coat complex subunit beta 1  Copb1  coatomer protein complex subunit beta 1  Symbol and/or name change 5135510 APPROVED