Hectd1 (HECT domain E3 ubiquitin protein ligase 1) - Rat Genome Database

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Gene: Hectd1 (HECT domain E3 ubiquitin protein ligase 1) Ictidomys tridecemlineatus
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Symbol: Hectd1
Name: HECT domain E3 ubiquitin protein ligase 1
RGD ID: 12460931
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN aorta development (ortholog); embryonic placenta development (ortholog); heart valve development (ortholog); ASSOCIATED WITH mitochondrial complex I deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase HECTD1; HECT domain E3 ubiquitin protein ligase 1, transcript variant X1; HECT domain E3 ubiquitin protein ligase 1, transcript variant X2; HECT domain E3 ubiquitin protein ligase 1, transcript variant X3; HECT domain E3 ubiquitin protein ligase 1, transcript variant X4; HECT domain E3 ubiquitin protein ligase 1, transcript variant X5; HECT domain E3 ubiquitin protein ligase 1, transcript variant X6; HECT domain E3 ubiquitin protein ligase 1, transcript variant X7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,255,912 - 42,347,810 (-)NCBI
SpeTri2.0NW_0049364945,761,801 - 5,853,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Hectd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,255,912 - 42,347,810 (-)NCBI
SpeTri2.0NW_0049364945,761,801 - 5,853,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HECTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1431,100,112 - 31,207,804 (-)EnsemblGRCh38hg38GRCh38
GRCh381431,100,117 - 31,207,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371431,569,323 - 31,676,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,639,075 - 30,746,440 (-)NCBINCBI36hg18NCBI36
Build 341430,639,074 - 30,746,274NCBI
Celera1411,434,814 - 11,542,175 (-)NCBI
Cytogenetic Map14q12NCBI
HuRef1411,686,880 - 11,794,092 (-)NCBIHuRef
CHM1_11431,568,490 - 31,675,834 (-)NCBICHM1_1
Hectd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,790,504 - 51,876,540 (-)NCBIGRCm39mm39
GRCm39 Ensembl1251,790,505 - 51,876,319 (-)Ensembl
GRCm381251,743,721 - 51,829,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,743,722 - 51,829,536 (-)EnsemblGRCm38mm10GRCm38
MGSCv371252,844,709 - 52,930,523 (-)NCBIGRCm37mm9NCBIm37
MGSCv361252,665,339 - 52,750,973 (-)NCBImm8
Celera1253,048,069 - 53,133,676 (-)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1222.11NCBI
Hectd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2669,181,429 - 69,267,803 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl672,510,255 - 72,596,446 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0672,509,658 - 72,596,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0682,073,583 - 82,157,571 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,842,842 - 71,930,042 (-)NCBIRGSC3.4rn4RGSC3.4
Celera668,057,228 - 68,144,745 (-)NCBICelera
Cytogenetic Map6q23NCBI
Hectd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,373,572 - 29,470,623 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540929,373,572 - 29,470,623 (+)NCBIChiLan1.0ChiLan1.0
HECTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11430,070,567 - 30,176,915 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1430,070,567 - 30,176,915 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01411,871,973 - 11,979,548 (-)NCBIMhudiblu_PPA_v0panPan3
HECTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,399,183 - 10,493,074 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,400,604 - 10,491,247 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,325,552 - 10,419,807 (-)NCBI
ROS_Cfam_1.0810,500,312 - 10,594,712 (-)NCBI
UMICH_Zoey_3.1810,183,683 - 10,277,214 (-)NCBI
UNSW_CanFamBas_1.0810,260,046 - 10,354,820 (-)NCBI
UU_Cfam_GSD_1.0810,544,896 - 10,638,539 (-)NCBI
HECTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,318,417 - 68,422,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1768,318,167 - 68,422,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2773,199,984 - 73,303,548 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hectd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248201,097,323 - 1,196,556 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013357442   ⟹   XP_013212896
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357443   ⟹   XP_013212897
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357444   ⟹   XP_013212898
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,810 (-)NCBI
SpeTri2.0NW_0049364945,761,801 - 5,853,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357445   ⟹   XP_013212899
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357446   ⟹   XP_013212900
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357447   ⟹   XP_013212901
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357449   ⟹   XP_013212903
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
SpeTri2.0NW_0049364945,761,806 - 5,853,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275211   ⟹   XP_040131145
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864042,255,912 - 42,347,548 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013212898   ⟸   XM_013357444
- Peptide Label: isoform X3
- UniProtKB: I3MYQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212903   ⟸   XM_013357449
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013212901   ⟸   XM_013357447
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013212900   ⟸   XM_013357446
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013212899   ⟸   XM_013357445
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013212897   ⟸   XM_013357443
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013212896   ⟸   XM_013357442
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040131145   ⟸   XM_040275211
- Peptide Label: isoform X3
Protein Domains
ANK_REP_REGION   HECT   MIB/HERC2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023965 ENTREZGENE
Ensembl Protein ENSSTOP00000017249 ENTREZGENE
NCBI Gene Hectd1 ENTREZGENE
UniProt I3MYQ3 ENTREZGENE