Ms4a15 (membrane spanning 4-domains A15)

Gene: Ms4a15 (membrane spanning 4-domains A15) Ictidomys tridecemlineatus

Analyze

Symbol:

Ms4a15

Name:

membrane spanning 4-domains A15

RGD ID:

12460745

Description:

ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

membrane spanning 4-domains A15, transcript variant X1; membrane spanning 4-domains A15, transcript variant X2; membrane-spanning 4-domains subfamily A member 15

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	12,002,989 - 12,009,770 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	2,117,387 - 2,130,743 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	2,116,823 - 2,123,592 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ms4a15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	12,002,989 - 12,009,770 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	2,117,387 - 2,130,743 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	2,116,823 - 2,123,592 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MS4A15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	60,756,867 - 60,776,733 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	60,756,867 - 60,776,733 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	60,524,340 - 60,544,206 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	60,280,916 - 60,300,780 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	57,888,546 - 57,908,417 (+)	NCBI		Celera
Cytogenetic Map	11	q12.2	NCBI
HuRef	11	56,871,327 - 56,891,196 (+)	NCBI		HuRef
CHM1_1	11	60,390,691 - 60,410,552 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	60,708,024 - 60,727,897 (+)	NCBI		T2T-CHM13v2.0

Ms4a15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	10,955,667 - 10,970,614 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	10,955,671 - 10,970,614 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	10,978,303 - 10,993,299 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	10,978,307 - 10,993,250 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	11,052,797 - 11,067,740 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	11,045,352 - 11,060,295 (-)	NCBI		MGSCv36	mm8
Celera	19	11,669,311 - 11,684,741 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	7.47	NCBI

Ms4a15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	217,053,199 - 217,066,693 (-)	NCBI		GRCr8
mRatBN7.2	1	207,628,305 - 207,641,799 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	207,628,305 - 207,641,799 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	216,003,144 - 216,016,636 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	223,071,406 - 223,084,833 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	215,757,543 - 215,771,035 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	227,033,796 - 227,048,718 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	227,033,796 - 227,047,290 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	234,099,484 - 234,113,131 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	213,477,584 - 213,491,078 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	205,120,308 - 205,133,803 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Ms4a15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	5,485,001 - 5,502,748 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	5,485,001 - 5,502,548 (+)	NCBI	ChiLan1.0	ChiLan1.0

MS4A15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	61,928,415 - 61,948,376 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	62,972,458 - 62,992,363 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	56,022,378 - 56,042,262 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	59,463,341 - 59,483,412 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	59,463,321 - 59,483,412 (+)	Ensembl	panpan1.1		panPan2

MS4A15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	55,488,523 - 55,496,359 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	54,061,183 - 54,069,335 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	56,535,997 - 56,544,122 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	55,593,565 - 55,601,675 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	55,214,971 - 55,223,094 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	56,096,208 - 56,104,332 (-)	NCBI		UU_Cfam_GSD_1.0

MS4A15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	10,960,498 - 10,969,359 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	10,959,559 - 10,969,433 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	10,434,022 - 10,449,148 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MS4A15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	13,061,545 - 13,073,392 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	13,061,584 - 13,073,280 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	110,422,419 - 110,434,426 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ms4a15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624926	228,943 - 235,346 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624926	225,576 - 236,243 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021730647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024502 ⟹ ENSSTOP00000015791

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936581	2,117,387 - 2,130,743 (-)	Ensembl

RefSeq Acc Id:

XM_021730647 ⟹ XP_021586322

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	12,002,989 - 12,009,770 (-)	NCBI
SpeTri2.0	NW_004936581	2,116,823 - 2,123,592 (-)	NCBI

Sequence:

show sequence

GGCCCCCTGAGCACCATGTCGGCGCCCCCCGCCAGCAACGGGGTATTCGTGGTCATCCCGCCCA
GCAACGCCAGCGGCCTCCGCCCGCCTCCGGCCCTTCTGCCCCCCTCCATGTGCCAGCCTCCAGG
GGTCGTGCAGTTCGAGGAACCACCGCTGGGGGCGCAGGCGCCCAGGGCCACCCCGCAGCCCGAC
CTGCGTCCAGTGGAGACATTTCTGACCGGAGAGCCCAAAGCTTTAGGGACGGCGCAGATCCTCA
TCGGCCTCATCCACCTGGGCTTCGGCAGCGTGCTGCTCATGGTCCGCCGCGGCCACCTGGGGAT
GCTCTTCATCGAAGGCGGCGTCCCCTTCTGGGGAGGAGCCTGCTTCATCATCTCTGGGTCCCTC
TCTGTGGCAGCCGAGAAGAAGCACACCAGCTGCCTGGTGCGGAGCAGCCTGGGGACCAACATTC
TCAGCGCCATGGCGGCCTTTGCTGGAACGGCCATTCTGCTCATGGATTTTGGTGTCACTAACTG
GGATGTGGGCAGGGGCTATCTGGCAGTGCTCACCATCTTCACCATCCTGGAATTCTTCATCGCA
GTCATTGCCACCCACTTTGGGTGCCAAGCCACACGTGCCCAAGCCAACGCGTCGGTGATTTTCC
TGCCAAATGCCTTCAGCACGGACTTCAACATCCCCAGCCCAGCAGCCTCCCCGCCCCCTGCCTA
TGACAATGTGGCATATATGCCCAAGGAGTCCTCCGAGTAGCAAGCTGTGACTCACACAGGTTGG
AGTCCGGCCTTTACCCTCTCTTGTGACTGTCCCCACCCCCGCCTGCTCCTGTAGGGCAGCCCTT
CCCCAGGTGTCCCCTCCAAGCCACACACGTGGTGGCACTAAGTGTTCCCCAGGGGTTTCTTTCC
AGGGTTCGTGTCCTTCAGTCCCTGAGCCCTGCCCACCCTTCCAGGGATGTCCCCTGGTGCTGCT
CAGGGTTTCTCTCTGCTTCTGGGGGAAATCCCGACCCCGGTGGAGACTCAGATTGAGACCTAGC
CTAGCCCACAGGCCTTTGGAAGGTCATTAAGTTCAGAACCCAGAATGTTCCAGAATGTTGTGGT
ACACAGTGAAGCTGTCCTCCCTTCCCAGGGTGGCTGGGGACCCTTCTGGGCCTTTCCCTGCTCT
TCCCCCACCCCCACTGCCTGAGGAACAAGGCTGTCCCCGAAGGTGTCCATGGGACCTGGACTGG
GTCTTCCAAGGACGTGGAGACACCTTCAGCCCAGTATCCACAGGTCCTGGTGCGTGGTTTGCCT
CATCCACAGAGGAAAATAAACTGTGCGG

hide sequence

RefSeq Acc Id:

XM_040284260 ⟹ XP_040140194

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	12,002,989 - 12,009,589 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021586322	(Get FASTA)	NCBI Sequence Viewer
	XP_040140194	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015791.2
GenBank Protein	KAG3284939	(Get FASTA)	NCBI Sequence Viewer
	KAG3284940	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021586322 ⟸ XM_021730647
- Peptide Label:	isoform X1
- UniProtKB:	I3MUJ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAPPASNGVFVVIPPSNASGLRPPPALLPPSMCQPPGVVQFEEPPLGAQAPRATPQPDLRPVE TFLTGEPKALGTAQILIGLIHLGFGSVLLMVRRGHLGMLFIEGGVPFWGGACFIISGSLSVAAE KKHTSCLVRSSLGTNILSAMAAFAGTAILLMDFGVTNWDVGRGYLAVLTIFTILEFFIAVIATH FGCQATRAQANASVIFLPNAFSTDFNIPSPAASPPPAYDNVAYMPKESSE hide sequence

RefSeq Acc Id:	XP_040140194 ⟸ XM_040284260
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000015791 ⟸ ENSSTOT00000024502

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021999	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024502.2	UniProtKB/TrEMBL
InterPro	CD20-like	UniProtKB/TrEMBL
	MS4A	UniProtKB/TrEMBL
NCBI Gene	Ms4a15	ENTREZGENE
PANTHER	MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MEMBER 15	UniProtKB/TrEMBL
	PTHR23320	UniProtKB/TrEMBL
Pfam	CD20	UniProtKB/TrEMBL
UniProt	I3MUJ6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar