Rnf207 (ring finger protein 207) - Rat Genome Database

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Gene: Rnf207 (ring finger protein 207) Ictidomys tridecemlineatus
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Symbol: Rnf207
Name: ring finger protein 207
RGD ID: 12460524
Description: ENCODES a protein that exhibits Hsp70 protein binding (inferred); metal ion binding (inferred); protein-folding chaperone binding (inferred); INVOLVED IN positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); long QT syndrome (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,580,768 - 30,596,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,065,260 - 1,079,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,580,768 - 30,596,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,065,260 - 1,079,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,206,119 - 6,221,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,205,475 - 6,221,299 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,266,179 - 6,281,359 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,188,776 - 6,203,946 (+)NCBINCBI36Build 36hg18NCBI36
Celera15,380,701 - 5,395,870 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,414,459 - 5,429,630 (+)NCBIHuRef
CHM1_116,254,831 - 6,270,001 (+)NCBICHM1_1
T2T-CHM13v2.015,731,763 - 5,746,943 (+)NCBIT2T-CHM13v2.0
Rnf207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,391,475 - 152,403,686 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,391,476 - 152,403,450 (-)EnsemblGRCm39 Ensembl
GRCm384152,307,018 - 152,319,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,307,019 - 152,318,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,681,132 - 151,692,734 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364151,150,823 - 151,162,408 (-)NCBIMGSCv36mm8
Celera4154,594,355 - 154,605,972 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.02NCBI
Rnf207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,098,074 - 168,112,585 (-)NCBIGRCr8
mRatBN7.25162,815,351 - 162,828,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,815,357 - 162,828,375 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05169,486,253 - 169,500,451 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,486,257 - 169,499,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05173,039,837 - 173,054,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,537,947 - 169,550,915 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5161,046,593 - 161,066,093 (-)NCBICelera
Cytogenetic Map5q36NCBI
RNF207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,003,165 - 222,017,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,645,979 - 220,658,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014,972,787 - 4,986,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,228,829 - 6,242,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,229,241 - 6,242,770 (+)Ensemblpanpan1.1panPan2
RNF207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,105,200 - 60,119,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBIUU_Cfam_GSD_1.0
RNF207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF207
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,518,231 - 125,530,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,624,482 - 29,638,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf207
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,178,299 - 5,183,610 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,176,316 - 5,183,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013362619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040287833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005734904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005734905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005734906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005734907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000028479   ⟹   ENSSTOP00000017179
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)Ensembl
RefSeq Acc Id: XM_040287820   ⟹   XP_040143754
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287821   ⟹   XP_040143755
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,485 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287822   ⟹   XP_040143756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,087 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287823   ⟹   XP_040143757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287824   ⟹   XP_040143758
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287825   ⟹   XP_040143759
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,596,429 (+)NCBI
RefSeq Acc Id: XM_040287826   ⟹   XP_040143760
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,596,429 (+)NCBI
RefSeq Acc Id: XM_040287827   ⟹   XP_040143761
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287828   ⟹   XP_040143762
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,596,429 (+)NCBI
RefSeq Acc Id: XM_040287829   ⟹   XP_040143763
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,580,768 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287830   ⟹   XP_040143764
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,580,779 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287831   ⟹   XP_040143765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,776 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287832   ⟹   XP_040143766
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,580,769 - 30,591,433 (+)NCBI
RefSeq Acc Id: XM_040287833   ⟹   XP_040143767
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,771 - 30,591,433 (+)NCBI
RefSeq Acc Id: XR_005734904
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,593,130 (+)NCBI
RefSeq Acc Id: XR_005734905
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,592,270 (+)NCBI
RefSeq Acc Id: XR_005734906
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,588,293 (+)NCBI
RefSeq Acc Id: XR_005734907
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505830,581,120 - 30,588,293 (+)NCBI
RefSeq Acc Id: XP_040143763   ⟸   XM_040287829
- Peptide Label: isoform X9
RefSeq Acc Id: XP_040143766   ⟸   XM_040287832
- Peptide Label: isoform X12
RefSeq Acc Id: XP_040143764   ⟸   XM_040287830
- Peptide Label: isoform X10
RefSeq Acc Id: XP_040143756   ⟸   XM_040287822
- Peptide Label: isoform X2
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143759   ⟸   XM_040287825
- Peptide Label: isoform X5
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143762   ⟸   XM_040287828
- Peptide Label: isoform X8
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143760   ⟸   XM_040287826
- Peptide Label: isoform X6
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143754   ⟸   XM_040287820
- Peptide Label: isoform X1
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143761   ⟸   XM_040287827
- Peptide Label: isoform X7
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143758   ⟸   XM_040287824
- Peptide Label: isoform X4
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143757   ⟸   XM_040287823
- Peptide Label: isoform X3
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143755   ⟸   XM_040287821
- Peptide Label: isoform X2
- UniProtKB: I3MYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143767   ⟸   XM_040287833
- Peptide Label: isoform X13
RefSeq Acc Id: XP_040143765   ⟸   XM_040287831
- Peptide Label: isoform X11
Ensembl Acc Id: ENSSTOP00000017179   ⟸   ENSSTOT00000028479
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025919 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028479.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Actin interacting protein 3, C-terminal domain UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro RNF207 UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Rnf207 ENTREZGENE
PANTHER PTHR22635 UniProtKB/TrEMBL
  RING FINGER PROTEIN 207 UniProtKB/TrEMBL
Pfam zf-B_box UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt I3MYI3 ENTREZGENE, UniProtKB/TrEMBL